Detail information of Os03g0805200_circ_g.4


General Information
CircRNA Name Os03g0805200_circ_g.4
ID in PlantcircBase osa_circ_022342
Alias NA
Organism Oryza sativa
Position chr3: 33615892-33615973  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method circRNA_finder
Parent gene Os03g0805200
Parent gene annotation Similar to RNA helicase (Fragment). (Os03t0805200-01)
Parent gene strand -
Alternative splicing Os03g0805200_circ_g.5 Os03g0805200_circ_g.6
Support reads 2
Tissues seed
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os03t0805200-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGCTGCACTGGCGTAGGTTTCACATATTTGCACCTCCGTATccatgagatcccgccctgcaatg
gagattggaatggcatac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCATGAGATCCCGCCCTGCAATGGAGATTGGAATGGCATACCGCTGCACTGGCGTAGGTTTCAC
ATATTTGCACCTCCGTAT
Conservation Information
Conserved circRNAs NA
PMCS 0.103658537
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017