Detail information of Os10g0573000_circ_g.4


General Information
CircRNA Name Os10g0573000_circ_g.4
ID in PlantcircBase osa_circ_008124
Alias NA
Organism Oryza sativa
Position chr10: 22751508-22751787  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os10g0573000
Parent gene annotation Similar to Carbohydrate kinase-like protein. (Os10t0573000-01)
Parent gene strand +
Alternative splicing Os10g0573000_circ_g.2 Os10g0573000_circ_g.3
Support reads 3
Tissues root
Exon boundary   No-No
Splicing signals   TA-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTAGCTGTACTTTTTGACTCATTGAACATTCACCGTGTATAATTTACTTACTGGACAACTATAT
AGAAGTGTTGCTGGCACTAATATAGGAGTATGACCTgtcagttgatatgtttgtacttcagggt
tgttattcccccttctagggacttctgttgcaatatcagactaaattttaatttttgaagatga
gtagttta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCAGTTGATATGTTTGTACTTCAGGGTTGTTATTCCCCCTTCTAGGGACTTCTGTTGCAATAT
CAGACTAAATTTTAATTTTTGAAGATGAGTAGTTTAACCAGGTCTGCTTTTAGTATGAATGTAT
CAATGAGAACCACCATCAGATATCAACTTTACTTGACAGGTCTTATTACTTGTTAGCTGTACTT
TTTGACTCATTGAACATTCACCGTGTATAATTTACTTACTGGACAACTATATAGAAGTGTTGCT
GGCACTAATATAGGAGTATGACCT
Conservation Information
Conserved circRNAs NA
PMCS 0.120844494
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017