Detail information of Os10g0573000_circ_g.2


General Information
CircRNA Name Os10g0573000_circ_g.2
ID in PlantcircBase osa_circ_008122
Alias NA
Organism Oryza sativa
Position chr10: 22751012-22751507  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0573000
Parent gene annotation Similar to Carbohydrate kinase-like protein. (Os10t0573000-01)
Parent gene strand +
Alternative splicing Os10g0573000_circ_g.3 Os10g0573000_circ_g.4
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0573000-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATTTGCATTTCTTGTCTAAGCCGGTCAAAGATGGGACTACTGGAACTGTGATTGTTCTAACA
ACTCCAGATGCACAACGAACTATGCTTGCATATCAGgttgatttctcagggatggtggacgacg
agttccttcacagattgggcatacaaaagggtaccagaaaggttgtcaaccacgaggagagagg
gcgtgtct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 384
Transcript exons: 22751012-22751277,22751390-22751507
GTTGATTTCTCAGGGATGGTGGACGACGAGTTCCTTCACAGATTGGGCATACAAAAGGGTACCA
GAAAGGTTGTCAACCACGAGGAGAGAGGGCGTGTCTTGCGCGCCATGGATGGTTGCAGCTACAA
GGCTGCCGCTGGAGGCTCACTGTCCAACTCGCTTGTCGCGCTATCAAGGCTTGGTAGTAGCCGC
TCCACTAACTACCCCGAGCTTAGAATCGCGATGGCTGGCAGTGTGGGCAGCGACCCACTTGGTA
GTTTTTACAGGGCAAAATTGCGCCGTGCTAATTTGCATTTCTTGTCTAAGCCGGTCAAAGATGG
GACTACTGGAACTGTGATTGTTCTAACAACTCCAGATGCACAACGAACTATGCTTGCATATCAG

Genomic sequence GTTGATTTCTCAGGGATGGTGGACGACGAGTTCCTTCACAGATTGGGCATACAAAAGGGTACCA
GAAAGGTTGTCAACCACGAGGAGAGAGGGCGTGTCTTGCGCGCCATGGATGGTTGCAGCTACAA
GGCTGCCGCTGGAGGCTCACTGTCCAACTCGCTTGTCGCGCTATCAAGGCTTGGTAGTAGCCGC
TCCACTAACTACCCCGAGCTTAGAATCGCGATGGCTGGCAGTGTGGGCAGCGACCCACTTGGTA
GTTTTTACAGGTAGTTCACTAGTTTGACAACATATTTTTGCACGTACTGATGTCTTAATTGCTG
CACTAGAAGCTTCAGAGTGTTGGCTGACATCACACTGTTGGTTGAATTGTTCTATTAGGGCAAA
ATTGCGCCGTGCTAATTTGCATTTCTTGTCTAAGCCGGTCAAAGATGGGACTACTGGAACTGTG
ATTGTTCTAACAACTCCAGATGCACAACGAACTATGCTTGCATATCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.281760047
Functional Information
Coding potential Y
Potential coding position 22751028-22751504(+)
22751480-22751457(+)
Potential amino acid sequence MVDDEFLHRLGIQKGTRKVVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALSRLGSSRSTNYP
ELRIAMAGSVGSDPLGSFYRAKLRRANLHFLSKPVKDGTTGTVIVLTTPDAQRTMLAYQVDFSG
MVDDEFLHRLGIQKGTRKVVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALSRLGSSRSTNYP
ELRIAMAGSVGSDPLGSFYRAKLRRANLHFLSKPVKDGTTGTVIVLTTPDAQRTMLAYQVDFSG
MVDDEFLHRLGIQKGTRKVVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALSRLGSSRSTNYP
ELRIAMAGSVGSDPLGSFYRAKLRRANLHFLSKPVKDGTTGTVIVLTTPDAQRTMLAYQVDFSG
MVDDEFLHRLGIQKGTRKVVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALSRLGSSRSTNYP
ELRIAMAGSVGSDPLGSFYRAKLRRANLHFLSKPVKDGTTGTVIVLTTPDAQRTMLAYQ(+)
MHNELCLHIRLISQGWWTTSSFTDWAYKRVPERLSTTRREGVSCAPWMVAATRLPLEAHCPTRL
SRYQGLVVAAPLTTPSLESRWLAVWAATHLVVFTGQNCAVLICISCLSRSKMGLLEL*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017