Detail information of Os04g0409600_circ_g.3


General Information
CircRNA Name Os04g0409600_circ_g.3
ID in PlantcircBase osa_circ_023756
Alias NA
Organism Oryza sativa
Position chr4: 20252767-20254636  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method PcircRNA_finder
Parent gene Os04g0409600
Parent gene annotation Similar to Histone deacetylase. (Os04t0409600-01)
Parent gene strand +
Alternative splicing Os04g0409600_circ_g.4 Os04g0409600_circ_g.5 Os04g0409600_circ_g.6
Support reads 1
Tissues seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0409600-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATGAGTTTTGCATGACTTTCCTTTGCAGAAATTCCAGACAATGAATACATCAAATACTTTGCT
CCAGATTATACATTGAAAGTATCGAATGTGAACATGggtaatgactgtaagtttccacaagtat
ggtgattttttcttccctggcacaggtgatattaaggtaatgttccactaacaagctcctgaat
atttttta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTAATGACTGTAAGTTTCCACAAGTATGGTGATTTTTTCTTCCCTGGCACAGGTGATATTAAG
GTAATGTTCCACTAACAAGCTCCTGAATATTTTTTATGTACTTTTTGGTATGATGTGGTTGGTG
ATTGGCCCTTCTCTGCATTCTGTTTTATCCTTACCCTTTTCGCATGAAGTGTGTGTGACATGCG
TACTCTCATTTGTGTGAAAAAAGAAGAGACAGATTAACCAAAGATGGTCCCCAGTTGATTTTGT
AATGCACAAAATTGATAGCACCTGTAGGTAATTGTTTATGAGCAGTTAATCTTGTTTCTTTTTA
GTTCTACCCGCCAAGAGGCTGTAAATATGTAACATCATAGAGTTGAACTTTGGTTTTTTTTACT
GGAGATTCTTGGCATGTTATTCTATTTAAATATCAACCATTGTAATTGGGAATTCAGGTGGTTA
TGTATTTGAAAAACGTCATACTAGAATGCATCATAATTCGTATACGCATGCTTAATTGTCATCT
GGGCTGACAAAAAAAAAACATGTGCACATATACGCCCGTCATTTGAATCTTGTAGTATGTTAAT
TTGTTATGTATCCACTGTACTACTAGGCAACTTTATTAAATAAAAATATCCCAAATAACTGGAA
GGTAGAGCAAGTGTGCTACAAAAAGGGCAAGGTTGAAAATGAACATAAAACATGCCATGTTCTT
CTCAGTAACGATGATACTTTATATAGCTTCGTTTTAAATGATTGTGCTGCTTCATATTGATTTA
CCTGACTCTCATTTGAAGGATATAGGAGAAAGAGAAGGAAAATATTATGCCATTAACATTCCAC
TTAAAGATGGGATAGATGACTCCGGCTTTACTCGCCTTTTTAAAACAGTAAGCCCACTTTACAT
TACTTTCTCATCTTTCATGTCATTGTTTAGTCTTATCAAGTTATGCATGTCTATTATGTAGGTT
ATTGCCAAAGTTGTTGAGACATATCTGCCAGGTGCTATTGTTCTTCAATGCGGGGCTGATTCCT
TGGCACGGGACCGTCTGGGGTGCTTCAATCTGTCCATTGAAGGTTCTGTACTTCTTAAATCTGA
TGTGTACTTGTTGATTCAGCAGAACTGTGCTCTAGATGTAAAGTTAGTGAACTGTGCTGCATAT
TCTTGGATGAGCTATTAGGGTTCAGGCGGTATCTTCGAGATAATGTGAAACCTTCTCTCAAGTC
TCAATTATTTCTTACCATAGTTTTGAGATTGTTATTGCACTAATAGTTCTGACTTATTTTGAAA
TTTAAATTTTGTTTCTTTGAGCTATACTTAGTGAATGATCTTTTAATACTTGCATGTGTACTTG
CAAACAGGCCATGCTGAATGTGTGAAGTTTGTCAAGAAATTCAATATCCCTCTACTGGTAAGGA
GAAACCGTTACTGCGTGTGATTTCTCTTGTTCCTCCTTGGATATCAATGTATTTCCCATCATGC
AGGTGACTGGGGGTGGTGGATACACAAAAGAGAATGTAGCACGCTGTTGGGCTGTTGAAACTGG
TGTTCTTCTAGATACGGAGCTCCCAAATGGTATTCTTTTCTTTTGCAATTCTGTACTTCTCGGT
CCTTTTGGCCTGTTGTTTTAGAGGACACTACTAGTAATCCCTCAAATGCATGCAACAGTTCATG
TATTCTTTTCCTCACATTTGCTGGCATATCAAGTTGCAAACAGATCTATCAAGAACGGGATTGA
CTAGTAGAGTTCCTTAATAATTTCTAAAACAGCAGTCTGTGATATGAGTTTTGCATGACTTTCC
TTTGCAGAAATTCCAGACAATGAATACATCAAATACTTTGCTCCAGATTATACATTGAAAGTAT
CGAATGTGAACATG
Conservation Information
Conserved circRNAs NA
PMCS 0.145228173
Functional Information
Coding potential Y
Potential coding position 20252772-20252796(+)
20254124-20254589(-)
Potential amino acid sequence MTVSFHKYGDFFFPGTGDIKDIGEREGKYYAINIPLKDGIDDSGFTRLFKTVIAKVVETYLPGA
IVLQCGADSLARDRLGCFNLSIEGHAECVKFVKKFNIPLLVTGGGGYTKENVARCWAVETGVLL
DTELPNEIPDNEYIKYFAPDYTLKVSNVNMGNDCKFPQVW*(+)
MAFNGQIEAPQTVPCQGISPALKNNSTWQICLNNFGNNCFKKASKAGVIYPIFKWNVNGIIFSF
SFSYILNITCAREEKITILVETYSHYPCSHSILSMYNLEQSI*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017