Detail information of Os04g0409600_circ_g.5


General Information
CircRNA Name Os04g0409600_circ_g.5
ID in PlantcircBase osa_circ_023758
Alias NA
Organism Oryza sativa
Position chr4: 20253833-20254092  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os04g0409600
Parent gene annotation Similar to Histone deacetylase. (Os04t0409600-01)
Parent gene strand +
Alternative splicing Os04g0409600_circ_g.3 Os04g0409600_circ_g.4 Os04g0409600_circ_g.6
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   TA-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTACCATAGTTTTGAGATTGTTATTGCACTAATAGTTCTGACTTATTTTGAAATTTAAATTTT
GTTTCTTTGAGCTATACTTAGTGAATGATCTTTTAAgttctgtacttcttaaatctgatgtgta
cttgttgattcagcagaactgtgctctagatgtaaagttagtgaactgtgctgcatattcttgg
atgagcta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTCTGTACTTCTTAAATCTGATGTGTACTTGTTGATTCAGCAGAACTGTGCTCTAGATGTAAA
GTTAGTGAACTGTGCTGCATATTCTTGGATGAGCTATTAGGGTTCAGGCGGTATCTTCGAGATA
ATGTGAAACCTTCTCTCAAGTCTCAATTATTTCTTACCATAGTTTTGAGATTGTTATTGCACTA
ATAGTTCTGACTTATTTTGAAATTTAAATTTTGTTTCTTTGAGCTATACTTAGTGAATGATCTT
TTAA
Conservation Information
Conserved circRNAs NA
PMCS 0.154807051
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017