Detail information of Os01g0513100_circ_g.1


General Information
CircRNA Name Os01g0513100_circ_g.1
ID in PlantcircBase osa_circ_001909
Alias Os_ciR5792
Organism Oryza sativa
Position chr1: 18088061-18092662  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os01g0513100
Parent gene annotation Similar to Protein phosphatase 2C ABI2. (Os01t0513100-01)
Parent gene strand -
Alternative splicing Os01g0513100_circ_igg.1 Os01g0513100_circ_ig.1 Os01g0513100_circ_ig.2 Os01g0513100_circ_ig.3 Os01g0513100_circ_ig.4
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os01t0513100-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAACACTCTTAGAGGAGAGCTACAACTGACCTCTCTGATAGCATTGCTGAACCTTCTTCGAAT
AACTCTTCCACCATACCCGCTGCTGACAGCTGCTTAattgaaccagcatggactgatatacctt
cacttggttcaaggtccacctggcagatggcacatgtaaacaagcttgatgatgttctccgacc
acttgagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTGAACCAGCATGGACTGATATACCTTCACTTGGTTCAAGGTCCACCTGGCAGATGGCACATG
TAAACAAGCTTGATGATGTTCTCCGACCACTTGAGTCATTGCCTAACCTGCGTAGTAAAAAGCA
TATGAAATCAGAAAATATATTCTAAAGTGCACGTCTTATGGACAGAAAGCATAAGATCTCTGCA
AAGAAAGATAGTGAACGAATATTAGAAATAAAAATTGCAAACAACCCGAGCTGAAGAGAAATTT
GTACATCACATTACAAAAAACATATGGTTGCATTATTCTTATGTGTAGCACAGTATAGTACCAA
GCTAACAGTCAAAATAGTCAGCAAGAAGGGTGGTAAATCAGCAGTTACATGGACTTTTGCCAAC
ATATAGACTAAGCATAAGCTGATCTATATATATAAAGCAGCAAGCAAACAAGCTCAAAAGAGCT
TGTTCAAGTTATTCATGCAGATTAGGGAAATCAACCAAGACGAACAGCTGATTCAATCAAAACG
AACAAGTTAAAATGCTAAAGCATTATAATCTTTATGTGCATGACATTACTAACCACTCCCAAAA
CATTGGATTTGTCTCACACAAGGCTTGTACAAACCAACTTGTGGTCCTTTCAATTAAAGGATGA
ATGAAGAGGGTATTCCTCTAAGCTGTACAAAATAAATTGTGATCTAAGTGCTCAAACAGAATAA
TGTACACCCCCCCACCACCCCCACAAAAAAAATGTAGCTTATCTATTTCCAATTCTCCATGTTC
CTCATCTCATTCCCACGTTGAAAGGAAGACTCTAAGCATTTTGGCAACTTGGTGGACCAGCCAA
CAGGGTTCCTCCAATCCTCCCTTATATACGAGAATACGAAGGGGACAAAGGAATGGTTGATTGT
GTACACATACAAAGAATTGTTTTAATAGTGGACTGAGAGCACCATGTTAGCAAGACAACTCAGT
ATAAGTTCAGCTTGGTGGCTATCTCAATGGTGAAAACTAGTTTACCCTTGTATACCTATTTGAG
AATAGAACAAGCTGACCGCTTTATCAGGGGGTGGGCCCTGCATTATTCAAGGGTATTCAGATGT
ATACCCAAGATTTTTAGCAAAAAACTAACATATATCTATGTATTTGGTATATGTGTTAAAAAAT
AGAAAAAAGACCTCAATCAGCCCATAGAACAAACAAGCCACGTTACTAGGCCGTGTCCCTCCTC
CCCTATCTTTTGGCCCATTCGCTAGCCTAGGCCCAACTTTTCCCCCACTCCCAAACAGCCAAAC
AGGCCGGCCAGGCCCACCCACCACCAAGGCACCCACATAAACCAAACCCTAGCTAGGGCAGGGA
CAGTGGGTGGCGGTGGCGTGGGCATGGCATGGGTGGCTGGTGGCTGAGCAGCGGCAATCGGGTG
ACGGCGGCGCGCCACCACGCGGGCTGCGGTGGCCGGGCGGTGCTGCAGGGGCGGCCGAGGGCGC
TGGGCGGAAACAAGGCAGGGGCAACGGGTGGCGGTGGCTGGCGGTGTGGCACAGGCTGCTAGTG
GCTGATTGGCGACGACCGGCAATGGCAGCACGCCTCACGCGTGCTACGGCTGCACGATGTTAGT
GGCAAGGAGGTATGCACAGTGGCCGAGCGGCATAGGTGCAGGCGCCGAGCAGTGACAGGGCAAG
GGGTCGGGCTGGACGGTGTGCTAGGCGGCAAGCCAGTGAGGCCACAAGGGTGATTGGGTTGGGT
GAGCTCGGCTGACAACTATTGCTACTCATCTGCTCTGCCTTCTAAAATCTCAAGCAGAAGTTAG
TGAATTTTTCTGAATAGTTGATTTGCTCTACTCATCTGAGTTATTCACAATTTCACACTTAGGA
TTTAGCCATTTAGGGAAGTAGGAACTTGTGCTTGTGGAATGGCTTTAGATGCTTACTGTATATA
TACCAGGATTTAGACTTGTGCAATGGCTTAATTTCTAAGAATAGAAGTACAGTTGGCTATTAAA
TTCTAGGTCCAAAAATGAAGAGGGACAAGGGGCTATTAGCACTTCTATATGTTGAACAATTTCA
AGTAATGATCAATTCTATGAAAATGTGAATTTAGCCTCAATTTTGTGTTATATATATGTTAGAT
ATCGTACAAACACTAGTGTTTGATGTTATAGAAGCCAATTATTAGGCATTTGGGTGTTTAAAAG
AACTTACATTACCCTTCATATTTTGAACGCCCAACCTCTAAATCCTGGGCACGCCCCTGCGCTT
TATCATTGTCTTTTGGCATGAACAAGTATGCGATCGACTGGCTAGGAAATGACTGGATAATTTT
ATCATGATGTTTTTCTAACTAGAGATATAGGGGGACAAATAGTGTTTTCACGATAAGGATTGCC
ATCTGTCTTGCCCACATGGCACATAAGGTGGGCCCAAGGGTCATATTGACCCAAAAGGTAAAGT
TAAATGACTGGTTTGGACAAAATCAAATTTCAAGGACCAAAGCGACCCTGGAATGGAACTTGAT
GGACCAAATTGGCCTATTTTCCCAAACCAAAAATGCTATTTATCTAAGCAGTCCATTTTCAAGC
ATCCTCACCTTGTTCTAGATAAGCATGAAGCATGCAATGTCCACCTATAAGATCAGCTCAAGTT
GTTTGTATTTGCTCATTATTACTTGATCGTTACTTACCAAGGTAGTAATAGTTACTGTCTAACT
CTCCCAGAGCTAATATTAAATAATAAGAACAATACTAATGCCAGGGCTCAATGAGCTCATCCCA
TCTGACAAGTGTGTCACCACATCGGAACATATTGCTCAAGTATTGTGCTTGCAGGAAGTAAGTT
GCGCCAATCTTGGGCCAACATAATATAGTACCATCAGAGAACTGAGTAAGCAATAAATGTGCAC
TCCAAAATTAGGAGTACAATGGACCAGAAAATCATAGGTGAGCAGACTAGGATTATTGTGTTCT
GTTATCATCTGAATTGAACCAAAAAAAAGTAAGATCTGGGAGGGAATGAGATGGATAAGAAATT
GAAACAAAAACGCAGCCAATGAGCCAAGACGAAGCACAATTTTAAACAATGTGTTCAAACCAAG
GTCTAACTATTATCTGAAAAAGAAAGGGTCTAACTGGCACTGTGTCAGTGGCCAATATGTATCA
AATATTAATTGGATCTTGTTTCCAGTGCTTTCACACGGGGGCTGTGATCACTAATTTATTCCTT
TTGACTATGATAACCACTGATGTGAACTTTTGCATAGTTTGAACACACTTATTGCTTAGTCAAA
CTGAACTAATGGTGACAGTGTGACACTAAACCAATTGGGTGTGACTTGCAAGAAAACAAAATCG
ATCTGGTATGGTTTCAACCAGAGTTGTCACTGTCAGGATAGGGATCGTAGGCATAGTTTAAAGA
ACTGAACCAGATGTTAGCCTGTGAATAACTCACTTTAGTGGTTCCCCAATAGGAACACAGGTTT
ACCAGTTCAACCGACTGTTCAAAGAATTAATAAAACAAGTCATTGTCGGTATGGCATAGAAAAC
AGGCCTTACAGTACATGTTTCCCTCCTAAGGCAATACCATCGTGCGCTAGTTGGTTAAATGGGT
TGTAGAACATAGACTAGTCGGGTTCCACAGAGAGACCTTATTGGCTTCAACTTCATCCAACTGC
TCCAGTAATAATGTCAGTTCAGCACAAAACCAGCCCTTCACAGTGGTCACTAGCTCAGGGAGAC
TCCCTTGCTGAAACAGTCTTGGCTCAAAACCGGACCAGACTGTGCTAGTTCCTGATCACTGCTG
ATAGACAATAGAGGACAAGATGATAGTGAACCTGAACTAACTAGCTACAAATGTCAGTTAACAC
CTCCATTACTTGCTATCTCCACCCCCTTGCCATCACTGCTTGCTAGATTCATCACTGGCAAAGT
TGCTGATCACCATCATCACGGCTTGCTAGCTTGAGAGAAGAGAACATGAGAAAAGAGGATGGCG
GACAACGACTCATACTCCATTCACATTCATGGCACCAGCGGCCTGTGTAGTTGCAATATATCCA
TAAACCCTCCGTGTTTGTTTGTGTTTTTAAATCCAAAAAAAAGCCTTTATGGGCTGTTAGGCTA
CAGGAGTGGTCAATGCTGCTCAGATGGATTATTAGGCTCAAGGAGAACAGCTTCTTTTTTTTTT
CCTATATGTGGGTTGTACTATGATAAATAGCTTTGTACTTCATTGACCTTCAACAAGAATACCA
CGGCCAAGTTTATGGACTCAATCAACCTGTGTTAATGGTCTTGGTCAAGCAAGAGACTGGGTCA
TGGCGATCCAATCTGACTGGGTATATAATCCACAGGGTGTCATGGCGTCATGCTATACTTAAAA
CAGGACTACTGGACTAACATAGTGGTTAGTTAGCTCAAGAAAATAAACTACTGATGTATATACA
CATAAACACTGATGTATGGTTGACTATGAATCCAGCTGCTTACACCCAAGAACAGGGAGCTAGC
AGTGAAACACTTAGAAAGTTCATAAACACTCTTAGAGGAGAGCTACAACTGACCTCTCTGATAG
CATTGCTGAACCTTCTTCGAATAACTCTTCCACCATACCCGCTGCTGACAGCTGCTTA
Conservation Information
Conserved circRNAs NA
PMCS 0.091892496
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015