Detail information of Os07g0614250_circ_g.7


General Information
CircRNA Name Os07g0614250_circ_g.7
ID in PlantcircBase osa_circ_034747
Alias NA
Organism Oryza sativa
Position chr7: 25300559-25304911  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os07g0614250
Parent gene annotation Hypothetical protein. (Os07t0614250-00)
Parent gene strand -
Alternative splicing Os07g0614250_circ_g.1 Os07g0614250_circ_g.2 Os07g0614250_circ_g.3 Os07g0614250_circ_g.4 Os07g0614250_circ_g.5 Os07g0614250_circ_g.6 Os07g0614250_circ_g.8 Os07g0614300_circ_g.1 Os07g0614300_circ_g.2 Os07g0614300_circ_g.3 Os07g0614300_circ_g.4 Os07g0614300_circ_g.5
Support reads 3
Tissues root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered Os07t0614250-00:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTGAAGGTGGTGAAACTAAGCATTCAAAATAGCATTCCTTCAGAGTACACGAGCATGGTCCTA
CTTCAAACATTGGAGAAGGTAGATGCAGCACAAAAGgaaaaaggtaggcagggtgagaagttgt
ctttccggcatgaagcaactgttgagaattggtcaagcaaagatttcaatttttcatacagtgt
gagtttcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAAAAGGTAGGCAGGGTGAGAAGTTGTCTTTCCGGCATGAAGCAACTGTTGAGAATTGGTCAA
GCAAAGATTTCAATTTTTCATACAGTGTGAGTTTCCCTTTTGTGATCTCTTTATTAGCTGTAAT
CGGTAGTCACTTCTTTAAGTAGTTATGAGCTCACTAGTTCCTGTGATAATCTGACTTTCCAAGA
CTTCTCAAATTTTTCTTTTTTTGTGAGCATATGTTAGTTGCAGATGTAACTGAAATCTGGCTCG
AGAACTGTTTACTGTTTCAAAACTGCAATAGCTAAATATATGTTCAGATTTGTCTGATTTATGT
TCATTCCTATAGGTTTATTCTGGTGACTTATCTGGTGGTGTGCTTGTTCAACCATCGACATTGC
GTGATTATGATGATAGAGATAGGTTCTGCATATTTCTTTTACCTGGAGGTGGCAACAGAAAGGT
TAGTTGCTCTTACTTTTGCGGGGTTTCGTCCCATAGTTTTTATTTTTATTTATTTAAGCATATC
TTCCTTGAGTGAGATATCTGCAGTTGACAAAACTTTTATATTTAGAAGAGGGCCTCTAGCAGAA
ACCTTTCTGATGAAGCTAATGTAGAACTACTTTTTTATAGAACCAATCAACAAACCCACCATTC
TAAACTGCCATTTGGTGATCTTTTTCTAGTGAAATTCCACTAGCTATGTGCAAACTACAATCTG
GACTTCTTTTAGCAAATACTATCAGGATATTTTGCGATTGTAAATCATTAAAGTTATAGTAAAT
AAGGATGTTACTGAGGTGGCCTTGTTCATAGCACTTTTGGTTTATTGACACAGAAGTACATTCC
CTTTTTCCTTCTTCTGTGTTTCACAAAATCTCTCTCCTTGTTCCTATATCTCACCTGAGCAATT
CAATAGGTCTTCAGAAAAGCAGTTGTGTTTGTCATTGATACAAGTGGAAGCATGCAAGGACATC
CGCTTGAGAATGTGAAGAATGCGATGTCTACTGCTCTGTCAGAACTCACAGAAGGAGATTACTT
CAACATTATAACATTTAATGATGAGCTGCACTCATTCTCATCGTGTTTGGAGAAAGTAAATGAG
AAATCAATAGCAAGTGCACTTGACTGGATAAACTTAAACTTTGTTGCTGGTGGTGGTACAGATA
TTATGCATCCTTTGAATGAGGTATTATTGAATATTAAATCTCGATTGTGAATAGATGCATATGT
AGTATTATTTTTTATTCTATTACTGTTAATACTCTCACTTTTTTTTTTCATGAAAGGCAATGGC
ATCATTGTCAAGTGCTCATGATGTGCTTCCACAAATCTTTCTTATGACTGATGGATCAGTTGAT
GATGAACATAATATATGCCAAACTGTGAAAACGGAGCTCATCAGCAGAGGATCTAAATCTCCTC
GGATTTCTACTTTTGGACTAGGTAATGTTAAGGAGAGCGTCAAATATACAATTATCTCATTATT
CAAAACTCTTGACTTATCTCCTGGATCACATGAAAATTCTCCTCCCTACTTTTTGCACCAACGC
TCATGTATTTCTCTATCTCCAAATATCCTTTCTTGTGTAAGAGAAAAATGCTTACACCATAAGT
CAACAGACCAGTCAGTGTGGTGATATATGCTGCCAGCTTGTGATGAGACGAACCATATTTTAAT
TACTCTGCTGTTTTAGTTTTGTACTACTTCGTTACTGATTGCTTACAGTTTACCTGATATATTC
TTTTTGCTCTTTTCATTTTATCACTGGAATAACAGGTTTGTATTGCAACCACTATTTCTTGCGC
ATGCTGGCATCAATAGGCAGGGGGCATTATGATGCTGCATTTGAGACAGGTACCAAGCCCCTAA
ACCCTTTTGTTCTCATCATAGCAAACAGTATGCTCTTACCTTTATGTTGGTCTTTAAACTTGAA
GGTTAGAACAATGATCTACACAGTCTACCCTTTCTCCATGGATTTCTTAGCTTTTCCTGAGACA
CACGATATATACTGTTATCTCAACCAAATTATAATAGAAAAACCAAACTGCAATCAGTTCATAT
TGTTAGAGGTGGCAATAATGTTTTCTATGAAGGGATCCTCTTGCTCTGCAATCTAAGAGCTAGT
TGTACTCTTGGTTTGCAATTTTCCACGTAACACTGTTTCTTTATGATCCCTGCATGCTGTTTAA
GTTGACACTCCATCTTGCAACCTCTGCTCAAGTTTCATGGGCATTCTACCAATACATTATTGTT
ATTGATCTGGATTTATTCCTGAAGTTCATATCTAAGCAATACTGTTCTATTATATGCATTAATT
GGACAAATATGACTTTTATGAAGTCCATGTAACATCTTCATAAACCTTTTTTTTTTGGTGAATT
GTTTTTGCAGGATCAATTGAGAGTCAGGTACTTAGGTGGTTCAGGAAAGCATCGAGTACAATAG
TTGCAAACATCTCCATTGATGCTACAGCACATCTTGATGAATTTGAAGTGAGTTAATTCATCAC
TAACTACTCAATATTGTAAATTTGGTTATGTAGAGATGGATATGTAAGACGAGTAATGCCATCA
AGGTGGTTCTGGCTGCATTGCGATCATGTTTCATAATGAAATTGACTCTTTTTCAGTATTTGAT
TTGTGATTTCCCAACTCATTTTCTCTGGTAGTGTATGTGTGCTGTGTTCATTGCTGCCATACCA
TCTTATACTGCTCTTCCTAGCAAAGAGCCTGTCCTGTATATAGAAATAATTATTTGCTGTATGG
AAGGGTGGTTTGTGGGTATGCTTTTTGCAGGTGTAACTAGTAGTAGCTAGAAAAAAACAGTAGT
TTTATTGTCTTCTGACTGTTCCTTTCCTCCAATTCAGATCGATTCTGAATACATTCCAGACATT
TCAGCAAAAAGTCCTTTATGTATATCTGGGAAATACCAAGGCAAGTTCCCAGATATGGTTACAG
CTAAAGGTTACTTGGCTGACATGAGAGAGATCTCGATTGAACTTAAGGTGCAGCATATAAAGGA
TATACCCCTTGACAAAGTAAGATGCTCACTATTGTGTACATTTGGTTTCTCTTCTTTCCATTGA
GAAACTTGCACAATATCATACTTGGGGCCATAGATTTCTCGAGTATACTAATAATATATGCATT
TTTTTTATTTATGATTTCTAGGTTTTGGCGGCACAGCAGATTGGCCTTCTCACAGCGAAGGCAT
GGCTTTCTTCTGACAAGCAACTGGAGAGAAAGGTGAGTTTATGTTTCAGGCTTTTGGCTAAGGG
TTGCATTATACATGTTCTTCGCTTTATACCTCCACTGAATTTTGGAGTCATGAGATATAGTGAA
GATAATCGGTAATGTTTGAAAGTTCTCACATTGCTTGTCTGAAGCATTTAAGCATTTAATGGGC
AATACATTGAAAAATGCTTGAGTTCGCTTGGGCTTTATGGGAACCAATCTCCTACGCACGTAAA
ACGGAGCGATCCATTAGCACGTGATTAATTAAGTATTAGCTTTTTTTTTCAAAAATGGGTCAAT
ATGATTTTTTTAAGCAACTTTCGTATAGAAACTTTTTGCAAAACACACACCGTTTAGCGGTTTG
AAAAACGTGCGCACGAAACACGATGGAGAGGAGATGGGAACTTGGTGTGCCGAACACAGAGTTC
CCAGCTCACCCCTCTCTTTTTCTGCGCGCATGTTTTTCAAACTACTAAACGATGTGTTTTTTTG
CAAAAAGTTTCTGTACAAAAGTTGCTTTAAAAAAGCATATTGATCCATTTTTGAAAAAAAAAAA
GTAAATACTTAATCACGCGCTAATGGACCGATCCGTTTTCCGTGCGGGGAGTTTAGTTCCCAAC
TCCCCATATCCGAACACAGCCTTAGGGTGTGTTTAGTTCACGCCAAAATTATAAGTTTGGTTGA
AATTGGAATGATGTGATGGAAAAGTTAGAAGTTTGTGTGTGTAGGAATGTTTTGATGTGATGGA
AAAGTTGGAAGTTTGTGTGTGTAGGAATGTTTTCATGTGATGGAAAAGTTGGAAGTTTGAAGAA
AAAGTTTGGAACTAAACTCAGCCCTAGTGTGGTTGTTGGTGCTGAATATTATTTTGATGTTCGC
TTTCCATTTCATTTATTCCCTGAACTAGTTTGAAATCTTTATAGGTCACATTCTCTTGTGAATT
GCAGTTGCCCCTGAAATATGTTACTTTCTTTAGTAGTTTGAGTTCCATTCAGTTAGCAGTATAT
GGGTTTCAGTAACTCCATTTCGTTTGATTTTTGAAGGTGGTGAAACTAAGCATTCAAAATAGCA
TTCCTTCAGAGTACACGAGCATGGTCCTACTTCAAACATTGGAGAAGGTAGATGCAGCACAAAA
G
Conservation Information
Conserved circRNAs NA
PMCS 0.113651279
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017