Detail information of BGIOSGA002654_circ_g.2


General Information
CircRNA Name BGIOSGA002654_circ_g.2
ID in PlantcircBase osi_circ_001768
Alias 1:1097423|1097943
Organism Oryza sativa ssp. indica
Position chr1: 1097423-1097943  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA002654
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA002654_circ_g.3 BGIOSGA002654_circ_g.4 BGIOSGA002654_circ_g.5
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA002654-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAATGCACTGAAAGAGCAGCTGCAAGCAAACCCATTGCTTGGAGACCCTAGTAAAGTTTTACTG
CTTGCATGTCATGGTTCAATGGCTAGCTCAGAGCAGggtttcacttatcctgttcggagtcgat
ttctagaagatattctcgaaattactgggcacagattaactccttacaatcaaattgatgacta
tggtcaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTTCACTTATCCTGTTCGGAGTCGATTTCTAGAAGATATTCTCGAAATTACTGGGCACAGAT
TAACTCCTTACAATCAAATTGATGACTATGGTCAAGAGAAAAGTTGGAAGATGCAAAAGCAAGC
TCTAAGGAAGAGGAAGAGCCAAATTGCTTCGGTTGTAGAAGTATGTAGTTCCTGCATTTTTATG
CCCACTATTTCCTGTTCAGAGCTTTGGTCTCCCCTCTAAACTCATCTTTTGAGCAGGATACAGT
TCAAGCTGCTGATTTAAGGGACTACAGTGCACGAACTCGTGACTCACTATCCTGTTGGAATCCT
GATTCGATTGGTTTTAACTTGATAGAAAATGTCTTATGCCATATATGCCAAAAGGAAAGAGCTG
GCGCAGTTCTTGTATTTATGACTGGGTGGGATGACATCAATGCACTGAAAGAGCAGCTGCAAGC
AAACCCATTGCTTGGAGACCCTAGTAAAGTTTTACTGCTTGCATGTCATGGTTCAATGGCTAGC
TCAGAGCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 1097538-1097940(+)
Potential amino acid sequence MQKQALRKRKSQIASVVEDTVQAADLRDYSARTRDSLSCWNPDSIGFNLIENVLCHICQKERAG
AVLVFMTGWDDINALKEQLQANPLLGDPSKVLLLACHGSMASSEQGFTYPVRSRFLEDILEITG
HRLTPYNQIDDYGQEKSWKMQKQALRKRKSQIASVVEDTVQAADLRDYSARTRDSLSCWNPDSI
GFNLIENVLCHICQKERAGAVLVFMTGWDDINALKEQLQANPLLGDPSKVLLLACHGSMASSEQ
GFTYPVRSRFLEDILEITGHRLTPYNQIDDYGQEKSWKMQKQALRKRKSQIASVVEDTVQAADL
RDYSARTRDSLSCWNPDSIGFNLIENVLCHICQKERAGAVLVFMTGWDDINALKEQLQANPLLG
DPSKVLLLACHGSMASSEQGFTYPVRSRFLEDILEITGHRLTPYNQIDDYGQEKSWKMQKQALR
KRKSQIASVVEDTVQAADLRDYSARTRDSLSCWNPDSIGFNLIENVLCHICQKERAGAVLVFMT
GWDDINALKEQLQANPLLGDPSKVLLLACHGSMASSEQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021