Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os01g0506200_circ_g.8 |
ID in PlantcircBase | osa_circ_001871 |
Alias | NA |
Organism | Oryza sativa |
Position | chr1: 17620401-17622964 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os01g0506200 |
Parent gene annotation |
Tetratricopeptide-like helical domain containing protein. (Os01t 0506200-01) |
Parent gene strand | - |
Alternative splicing | Os01g0506200_circ_g.1 Os01g0506200_circ_g.2 Os01g0506200_circ_g.3 Os01g0506200_circ_g.4 Os01g0506200_circ_g.5 Os01g0506200_circ_g.6 Os01g0506200_circ_g.7 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os01t0506200-01:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.218910001 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
17622896-17620417(+) 17622907-17622943(-) |
Potential amino acid sequence |
MSSITASFACLMLSSTSCAWPSLQHFDRL*(+) MLDIRDGNSWYNLGNAYLTSFFVSGSWDHMKLHHSVKAYQNAVVKAKHS*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |