Detail information of Os04g0386600_circ_g.2


General Information
CircRNA Name Os04g0386600_circ_g.2
ID in PlantcircBase osa_circ_023600
Alias Os04circ03650/Os_ciR3012
Organism Oryza sativa
Position chr4: 18988588-18992011  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, SMALT, Segemehl, find_circ
Parent gene Os04g0386600
Parent gene annotation Pyruvate/Phosphoenolpyruvate kinase, catalytic core domain conta
ining protein. (Os04t0386600-01);Pyruvate/Phosphoenolpyruvate ki
nase, catalytic core domain containing protein. (Os04t0386600-02
)
Parent gene strand -
Alternative splicing Os04g0386600_circ_g.1 Os04g0386600_circ_g.3 Os04g0386650_circ_g.1 Os04g0386650_circ_g.2 Os04g0386650_circ_g.3
Support reads 2/4/1
Tissues leaf and panicle/root/root, seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0386600-02:4
Os04t0386600-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATACAGCTTCAGTGATCAGACGCCCTTGATCTACCATTTCTCCATATGAGATGAGACCAGCAT
CTGGCAATCCAAGTCGTGCGGCAGAAACACAGAAACaggtatcccttcatttatcttctgcgtt
ccacttttttctgtgatctttaatcgaagtacaatatttgtggataatggctgggcttgctgga
ctgttgca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 833
Transcript exons: 18988588-18988803,18989563-18989685,18990089-18990370,18
991800-18992011
AGGTATCCCTTCATTTATCTTCTGCGTTCCACTTTTTTCTGTGATCTTTAATCGAAGTACAATA
TTTGTGGATAATGGCTGGGCTTGCTGGACTGTTGCATATTGCTTTTCTTCTTTGTAATATCGGT
TAAACCCTAGAGTATCCTTGATCTCCTGAAAAGATGGCAAGCTACCAGGTCGGGGTGCACCAGT
ACTTTTTATCGCAATCAGAGCATCCTCCATTGCGAGCATTGATACCCCAATCAGGGACAATGGG
TAGACTACGAGGCTAAAACCAATCTCCTGAAGTTCAGCAGGGCTCAATATGGGAGTTTTACCAC
CACCTTCTAGCATGTTTGCCATCTTTGGAACTTTAGGTGAAACCGCACAAAATGCTTTCATCTC
TTCTATTGAAGCAAGAGCATCAATGAATAGAACATCTGCTCCAGCATCGGCAAAAGCCTGTACC
CTCCATAGCGCTTCATCAATAGAGATAGCTTGACGAGAGTCTGACCTTGCAATGATAACAATGT
CAGAACCACTCTCTTTCCTAGCATCTACGGCAGCTTTTATGTGCATGATAGCATCCTCCCTTGA
GATAACTTTCCTTCCTTCAGTATGTCCACATGCTTTTGGTGCCACCTGATCTTCGAGCATGATT
CCAGCAAAACCAGCATTAATATACCCTTTTACGGTTCTCTTAATGCTCATAGCATTTCCATAGC
CATTATCACCATCGCCGATAACTGGGAGTGATACAGCTTCAGTGATCAGACGCCCTTGATCTAC
CATTTCTCCATATGAGATGAGACCAGCATCTGGCAATCCAAGTCGTGCGGCAGAAACACAGAAA
C

Genomic sequence AGGTATCCCTTCATTTATCTTCTGCGTTCCACTTTTTTCTGTGATCTTTAATCGAAGTACAATA
TTTGTGGATAATGGCTGGGCTTGCTGGACTGTTGCATATTGCTTTTCTTCTTTGTAATATCGGT
TAAACCCTAGAGTATCCTTGATCTCCTGAAAAGATGGCAAGCTACCAGGTCGGGGTGCACCAGT
ACTTTTTATCGCAATCAGAGCATCCTGCAGATCAAAGATTCATGTATTATGAAATACAAATAGT
GATTCCACACCAAATTGAATAGCTAACGAGTGTAACTAGTCTTGTACTCATGCACAATGGCACG
TGAATATGTGCATGCATTGAGAGATGTTAGGCTCCTCCCTGATGTTTTTCCCCCATACAGTAGC
AGACATTGGCATCAAACAAAACTTAGGCCCTGTTTAGTTCCCAAAACAACTTTTCACCCATCAC
ATCGAATGTTTGGGCACATGCATGGAGTATTAAATGTGGACAAAAAAAAACCAATTACACAATT
GGCGTGTAAATTGTGAGACGAATCTTTTAAGCCTAATTACGCAATGATTTGACAATGTGGTGCT
ACAGTAAACATTTGCTAATGACGGATTAATTAGGCTTAATAAATTTGTTTCGCAGTTTCCTGGC
GGAATCTGTAATTTGTTTTGTTATTAGACAACGTTTAATACTTCAAATGTGTGTCCGTATATCA
GATGTGACACCCCAAAACAAAAAATTTTGGGAACTAAACCGGGCCTTAATTGAGGAAGATCACA
TGTACACAGAGGTACCATAGGATTAAAAAAATGCAGTGAAATAAGATTGAAACAACTAAATAAT
TATCAATCAGGCAGAATAAATAACAAACAGGAATTTTAAAAAAAAAAACCATGCGCCCTTGCTC
AAACAAAATAGACATGCAAGTAATTTTGCAGGACATTCAGAAGTGTCCAGGATAAGAGCTGTAA
ACATAATGAACAAACCTCCATTGCGAGCATTGATACCCCAATCAGGGACAATGGGTAGACTACG
AGGCTAAAACCAATCTCCTGAAGTTCAGCAGGGCTCAATATGGGAGTTTTACCACCACCTTCTA
GCATGTTTGCCTGGAGAACAAAATACAGGGCTATAAACTCTCCTCACTTCAATGCTAGAGAAAA
GTAACAGGCTAATAGCTCAGAGACAAATAGAGAAGAGGACATTTGAAAGCAGTAATTATAAATG
ATTATGATATAACAAAGCTTAGGGTTACATCTTCAACTATGCACACTGAAAAATTTGCGAAAAT
CTATGGAACTTGCCAATTAGAAGTGGGTTTACACCCATGGTTGTGCTGTTCATGTTCAGAACTT
CAGCTCAATAGAAAAAATATAGAGTGCAATCCAAGAAAGAGTATTCCACTATTTTGTTAATGAA
ATTCAAAGAACCTTGGAATAGCTATAAACTCTTACATGGTTATCTCAAATTTTCAAGTATCTAG
AAAAGGCAAAAGAACAGAGTGCATCTAACCATCTTTGGAACTTTAGGTGAAACCGCACAAAATG
CTTTCATCTCTTCTATTGAAGCAAGAGCATCAATGAATAGAACATCTGCTCCAGCATCGGCAAA
AGCCTGTACCCTCCATAGCGCTTCATCAATAGAGATAGCTTGACGAGAGTCTGACCTTGCAATG
ATAACAATGTCAGAACCACTCTCTTTCCTAGCATCTACGGCAGCTTTTATGTGCATGATAGCAT
CCTCCCTTGAGATAACTTTCCTTCCTTCAGTATGTCCACATGCTTTTGGTGCCACCTTCAAAAA
TCATGTGTCATATCATTAACATGGAAACTAAAAAGGTAAAGAAATATCAATCTTGGAAGTCTTC
TGCACATATATCAATAATGGATTAAGCTAGAATGAATAAAGTAGCTACAGTAGTTTGAATAGCA
CAGATATGTGAAAGAACTAAGTATAATTTAATTACTGTAGGTGAAACATTTTTATCATAATGCA
ATAGTCGTGCTCAACAGATTGAACATTTGAGCTTAGTGAATTTGTGCTCAGGCTGTGATGTTAA
CATGATAGCTTAATTTGGACTAAGTATCACAGGACAGATCAATACGAATATATATAAAAGTTAA
AATATTTAAATAGCACCTCTAGCCTAGCAGTTACAGTGCTCAAGTAGCACCTCTAGGCCCTAAG
TTCGACTCCCCAAGGGAGCGAATTGCAGGCCTACTTAAAAAAAGTCACTCGCTGGCCCCTCATC
AAAACAGGTGTCAAGAACCAATCCATAGTGGGTGACTCCACATGTGGGGAGCAGAGCAGGGTTC
GTGGCTTTCTCAGTCAGTTTTATTGTGGCTTCTTCTTAATGAAAAGCCGTGGGGACAGTCATTC
CCCTGCCGGTCTAGTTCTTTTTTTTAAAAAAAAAAATAGGAGTAAGTGTCACTCACTGGAGAGA
TCAATATAGTTAGGTTGGAGCACTGCTATGGCCGGATTTTCAAAAGAAACAGTGAATACTTTAA
CTTTACTTTCTTGCCCTTGCAACACCCATTGTGACGTTTGCGTCAAAAAAAAACACCCATTGTG
ACGTGCAATGATGCATATTAATTATTATGTGGCTCTCTTTTTTTTTTCTCAAAAACACATGAGT
TGTGTTTCATCTCATTAAGAAGAAAGAAAATATTAGTACTAAGAAGGGCTCAATGAAACAACCC
CAATACAACCCAAGAATACATCCCACAAGCAATGCTCAACCACAACACGCCCTACATCAGGCAT
CTGGTGTCAACCTCTCCACTATGTACTTATTGAAGCTCTTGATTTCCTATCTAAAGGGAGGCTC
CTACTAAACAAATTCTCATAATTCAGTGCCTTGGAACTGATGTCCCAATCTTAGCCACCAAACG
GTATCTTCCATAGCTATACGACAGTAAAATTCCTATAGAATTGTACACTATACAGCCCAACATT
GAATAACATATTCATACATAAAAATTAAGCAAGGAACTGAGAAAGTAGAGCTCTCAACATTAAA
AGTGATCTCAAATGTCAGTACAGGAAATTGTAGCCTTATATAACAAATTAATTGAGATTCATAA
GTTTAGGATGAAGGGATGTTCACCAAAAGGTCTAATGTATAAAAAAAATGTTACAAATATGACC
ATAGATTGTTAAGACAACGGAGAGAGCCAATCCATGAGAAGATCATTTGGTGATACTTAGGAGT
TAGGAAGCATACCTGATCTTCGAGCATGATTCCAGCAAAACCAGCATTAATATACCCTTTTACG
GTTCTCTTAATGCTCATAGCATTTCCATAGCCATTATCACCATCGCCGATAACTGGGAGTGATA
CAGCTTCAGTGATCAGACGCCCTTGATCTACCATTTCTCCATATGAGATGAGACCAGCATCTGG
CAATCCAAGTCGTGCGGCAGAAACACAGAAAC
Conservation Information
Conserved circRNAs osi_circ_014293
PMCS 0.329904546
Functional Information
Coding potential Y
Potential coding position 18991964-18988628(+)
18988603-18991923(-)
18991951-18991945(-)
Potential amino acid sequence MRPASGNPSRAAETQKQVSLHLSSAFHFFL*(+)
MKGYLFLCFCRTTWIARCWSHLIWRNGRSRASDH*(-)
MVDQGRLITEAVSLPVIGDGDNGYGNAMSIKRTVKGYINAGFAGIMLEDQVAPKACGHTEGRKV
ISREDAIMHIKAAVDARKESGSDIVIIARSDSRQAISIDEALWRVQAFADAGADVLFIDALASI
EEMKAFCAVSPKVPKMANMLEGGGKTPILSPAELQEIGFSLVVYPLSLIGVSMLAMEDALIAIK
STGAPRPGSLPSFQEIKDTLGFNRYYKEEKQYATVQQAQPLSTNIVLRLKITEKSGTQKINEGI
PVSVFLPHDLDCQMLVSSHMEKW*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA