Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os04g0386600_circ_g.2 |
ID in PlantcircBase | osa_circ_023600 |
Alias | Os04circ03650/Os_ciR3012 |
Organism | Oryza sativa |
Position | chr4: 18988588-18992011 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, SMALT, Segemehl, find_circ |
Parent gene | Os04g0386600 |
Parent gene annotation |
Pyruvate/Phosphoenolpyruvate kinase, catalytic core domain conta ining protein. (Os04t0386600-01);Pyruvate/Phosphoenolpyruvate ki nase, catalytic core domain containing protein. (Os04t0386600-02 ) |
Parent gene strand | - |
Alternative splicing | Os04g0386600_circ_g.1 Os04g0386600_circ_g.3 Os04g0386650_circ_g.1 Os04g0386650_circ_g.2 Os04g0386650_circ_g.3 |
Support reads | 2/4/1 |
Tissues | leaf and panicle/root/root, seed |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os04t0386600-02:4 Os04t0386600-01:4 |
Conservation Information | |
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Conserved circRNAs | osi_circ_014293 |
PMCS | 0.329904546 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
18991964-18988628(+) 18988603-18991923(-) 18991951-18991945(-) |
Potential amino acid sequence |
MRPASGNPSRAAETQKQVSLHLSSAFHFFL*(+) MKGYLFLCFCRTTWIARCWSHLIWRNGRSRASDH*(-) MVDQGRLITEAVSLPVIGDGDNGYGNAMSIKRTVKGYINAGFAGIMLEDQVAPKACGHTEGRKV ISREDAIMHIKAAVDARKESGSDIVIIARSDSRQAISIDEALWRVQAFADAGADVLFIDALASI EEMKAFCAVSPKVPKMANMLEGGGKTPILSPAELQEIGFSLVVYPLSLIGVSMLAMEDALIAIK STGAPRPGSLPSFQEIKDTLGFNRYYKEEKQYATVQQAQPLSTNIVLRLKITEKSGTQKINEGI PVSVFLPHDLDCQMLVSSHMEKW*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Lu et al., 2015;Ye et al., 2015;Chu et al., 2017 |