Detail information of Os04g0386600_circ_g.3


General Information
CircRNA Name Os04g0386600_circ_g.3
ID in PlantcircBase osa_circ_023601
Alias Os_ciR9311
Organism Oryza sativa
Position chr4: 18988590-18988726  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os04g0386600
Parent gene annotation Pyruvate/Phosphoenolpyruvate kinase, catalytic core domain conta
ining protein. (Os04t0386600-01);Pyruvate/Phosphoenolpyruvate ki
nase, catalytic core domain containing protein. (Os04t0386600-02
)
Parent gene strand -
Alternative splicing Os04g0386600_circ_g.1 Os04g0386600_circ_g.2 Os04g0386650_circ_g.1 Os04g0386650_circ_g.2 Os04g0386650_circ_g.3
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os04t0386600-02:1
Os04t0386600-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAATGGCTGGGCTTGCTGGACTGTTGCATATTGCTTTTCTTCTTTGTAATATCGGTTAAACCC
TAGAgtatcccttcatttatcttctgcgttccacttttttctgtgatctttaatcgaagtacaa
tatttgtgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTATCCCTTCATTTATCTTCTGCGTTCCACTTTTTTCTGTGATCTTTAATCGAAGTACAATATT
TGTGGATAATGGCTGGGCTTGCTGGACTGTTGCATATTGCTTTTCTTCTTTGTAATATCGGTTA
AACCCTAGA
Conservation Information
Conserved circRNAs NA
PMCS 0.237986618
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015