Detail information of Os12g0623900_circ_ag.12


General Information
CircRNA Name Os12g0623900_circ_ag.12
ID in PlantcircBase osa_circ_012407
Alias Os_ciR9
Organism Oryza sativa
Position chr12: 26650410-26662169  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os12g0623950_circ_ag.1 Os12g0623950_circ_g.1 Os12g0623950_circ_g.2 Os12g0623950_circ_ag.3 Os12g0623950_circ_g.4 Os12g0623950_circ_g.5 Os12g0623950_circ_g.6 Os12g0623950_circ_g.7 Os12g0623950_circ_ag.8 Os12g0623950_circ_ag.9 Os12g0623950_circ_ag.10 Os12g0623950_circ_g.11 Os12g0623950_circ_g.12 Os12g0623950_circ_ag.13 Os12g0623950_circ_ag.14 Os12g0623950_circ_ag.15 Os12g0623900_circ_g.1 Os12g0623900_circ_g.2 Os12g0623900_circ_g.3 Os12g0623900_circ_ag.1 Os12g0623900_circ_ag.2 Os12g0623900_circ_g.3 Os12g0623900_circ_g.4 Os12g0623900_circ_ag.5 Os12g0623900_circ_ag.6 Os12g0623900_circ_g.7 Os12g0623900_circ_ag.8 Os12g0623900_circ_g.9 Os12g0623900_circ_ag.10 Os12g0623900_circ_ag.11 Os12g0624000_circ_g.1 Os12g0624000_circ_g.2 Os12g0624000_circ_g.3
Support reads 20154/439
Tissues root/seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAAGGTCTGCCCCTCCGCAAGGCGGAGCATGCTTTCTACTTGGACTGGGCTGTTCACTCCTTC
AGAATCACAAACTGCGGTGTTCAGGACACCACCCAGatccacacccacatgtgctactctaact
tcaacgacatcatccactccatcatcaacatggacgctgatgtgatcaccatcgagaactcccg
gtccgacg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1986
Transcript exons: 26650410-26650641,26658593-26658827,26658925-26659013,26
659754-26659886,26659959-26660153,26660254-26660354,2666
0574-26660739,26660863-26660948,26661039-26661207,266612
82-26661391,26661542-26661797,26661881-26661958,26662034
-26662169
ATCCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATCATCAACATGGACG
CTGATGTGATCACCATCGAGAACTCCCGGTCCGACGAGAAGCTGCTCTCCGTCTTCCGCGAGGG
TGTGAAGTATGGTGCTGGCATTGGCCCTGGTGTCTATGACATCCACTCCCCAAGGATCCCGTCC
ACAGAGGAGATTGCGGACCGCGTCAACAAGATGCTCGCGGCGACCTCAGGGCCAGCATCTGGAA
GCAAATGGCTGACGCTGGGATCAAGTATATCCCCAGCAACACCTTCTCGTACTATGATCAGGTT
CTTGACACGACCGCCATGCTTGGTGCTGTCCCAGAGCGCTACTCATGGACCGGTGGAGAGATTG
GGTTCAGCACCTACTTCTCGATGGCTAGGGGAAATGCCACTGTCCCTGCTATGGAGATGACCAA
GTGGTTTGACACCAACTAGCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTA
CTCTTCCCACAAGGCTGTGAATGAATACAAGGAGGCCAAGGCGGAGCTCGGCGTTGACACCGTG
CCAGTACTTGTTGGACCAGTTTCATACTTGTTGCTCTCCAAGCCTGCCAAGGGTGTAGAGAAGT
CGTTCGCTCTTCTTTCCCTTCTCAGCAGCATCCTTCCTGTCTACAAGTAAGGGAGGTTATTGCT
GAGTTGAAGGCAGCTGGTGCTACATGGATTCAGTTTGATGAGCCCACACTTGTTCTTGACCTTG
ACTCTCACCAATTGGCTGCATTCTCTGCAGCGTACACAGAACTCGAGTCGGCACTTTCTGGATT
GAATGTGCTTATTGAGACATACTTCGCTGACATTCCTGCTGAATCATACAAGCAGGACCCTCAC
ATCCCTGAACAGCGTGACTGCTTATGGTTTTGACCTTATCCGTGGTTCCAAGACTCTTGACCTT
GTCAAGAGTGCTGGTTTCCCCTCTGACAAGCTTGTGGTCTCGACTTCCTGCTCACTCATGCACA
CCGCTGTGGATCTTGTAAATGAGACCAAGCTCGATAGCGAGATTAAGTCATGGCTTGCTTTTGC
TGCCCAAAAAGTGGTTGAGGTGAATGCCCTTGCTAAGGCATTGGCTGGACAGAAGGATGAGGTC
AGGCTTACTTTGCAGCAAACACTGCTGCTCAGGCCTCCAGGAGGTCATCACCTCGTGTGACAAA
CGAGGAAGTCCAAAAGGCTGTGCTGCTGCTCTGAGGGGGTCTGACCACCGCCGTGCTACCAATG
TTAGCGCTAGGTTGGACGCACAGCAGAAGAAGCTCAACCTTCCAGTCCTTCCTACAACCACAAT
TGGTTCATTCCCACAGACTGTGGAGCTCAGGAGAGTCCGCCGTGAGTACAAGGCTAAAAAGTAC
AGGATCTCTGAGGATGAGTACGTCAGTGCCATCAAGGAGGAAATCAGCAAGGTTGTTAAGATCC
AGGAAGAGCTTGACATTGATGTGCTTGTTCACGGCGAGCCTGAGAGAGAAACGATATGGTTGAG
TACTTTGGTGAGCAGCTTTCTGGTTTTGCATTTACTGCCAATGGATGGGTGCAATCCTATGGAT
CCCGGTGTGTCAAGCCACCAATTATCTATGGTGATGTGAGCCGCCCCAACGCCATGACTGTGTT
CTGGTCCAAGATGGCGCAGAGCATGACCTCTCGCCCCATGAAGGGAATGTTGACTGGTCCCGTC
ACAATCCTTAACTGGTCTTTTGTCAGGAATGACCAGCCGAGGTCAGGTTTGAGACATGCTACCA
GATTGCTCTTGCCATCAAGAAGGAGGTCGAGGACCTTGAGGCTGGTGGTATACAGGTTTTTACA
GGTCATCCAAATCGATGAGGCTGCTTTGAGAGAAGGTCTGCCCCTCCGCAAGGCGGAGCATGCT
TTCTACTTGGACTGGGCTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCC
AG

Transcript length: 2026
Transcript exons: 26650410-26650629,26658592-26658826,26658924-26659014,26
659754-26659886,26659959-26660153,26660257-26660405,2666
0572-26660739,26660863-26660948,26661038-26661207,266612
84-26661391,26661542-26661797,26661880-26661958,26662034
-26662169
ATCCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATCATCAACATGGACG
CTGATGTGATCACCATCGAGAACTCCCGGTCCGACGAGAAGCTGCTCTCCGTCTTCCGCGAGGG
TGTGAAGTATGGTGCTGGCATTGGCCCTGGTGTCTATGACATCCACTCCCCAAGGATCCCGTCC
ACAGAGGAGATTGCGGACCGCGTCAACACCGACCTCAGGGCCAGCATCTGGAAGCAAATGGCTG
ACGCTGGGATCAAGTATATCCCCAGCAACACCTTCTCGTACTATGATCAGGTTCTTGACACGAC
CGCCATGCTTGGTGCTGTCCCAGAGCGCTACTCATGGACCGGTGGAGAGATTGGGTTCAGCACC
TACTTCTCGATGGCTAGGGGAAATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGACA
CCAACTAGCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTCCCACA
AGGCTGTGAATGAATACAAGGAGGCCAAGGCGGTAGCTCGGCGTTGACACCGTGCCAGTACTTG
TTGGACCAGTTTCATACTTGTTGCTCTCCAAGCCTGCCAAGGGTGTAGAGAAGTCGTTCGCTCT
TCTTTCCCTTCTCAGCAGCATCCTTCCTGTCTACAAGTAAGGGAGGTTATTGCTGAGTTGAAGG
CAGCTGGTGCTACATGGATTCAGTTTGATGAGCCCACACTTGTTCTTGACCTTGACTCTCACCA
ATTGGCTGCATTCTCTGCAGCGTACACAGAACTCGAGTCGGCACTTTCTGGATTGAATGTGCTT
ATTGAGACATACTTCGCTGACATTCCTGCTGAATCATACAAGGACCCTCACATCCCTGAACAGC
GTGACTGCTTATGGTTTTGACCTTATCCGTGGTTCCAAGACTCTTGACCTTGTCAAGAGTGCTG
GTTTCCCCTCTGGCAAGTACCTCTTTGCTGGTGTTGTGGATGGACGCAACATCTGGGCTGATGA
GACAAGCTTGTGGTCTCGACTTCCTGCTCACTCATGCACACCGCTGTGGATCTTGTAAATGAGA
CCAAGCTCGATAGCGAGATTAAGTCATGGCTTGCTTTTGCTGCCCAAAAAGTGGTTGAGGTGAA
TGCCCTTGCTAAGGCATTGGCTGGACAGAAGGATGAGGTCAGGCTTACTTTGCAGCAAACACTG
CTGCTCAGGCCTCCAGGAGGTCATCACCTCGTGTGACAAACGAGGAAGTCCAAAAGGCTGTGGC
TGCTGCTCTGAGGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCTAGGTTGGACGCACAG
CAGAAGAAGCTCAACCTTCCAGTCCTTCCTACAACCACAATTGGTTCATTCCCACAGACTGTGG
AGCTCAGGAGAGTCCGCCGTGAGTACAAGGCTAAAAAGTAGGATCTCTGAGGATGAGTACGTCA
GTGCCATCAAGGAGGAAATCAGCAAGGTTGTTAAGATCCAGGAAGAGCTTGACATTGATGTGCT
TGTTCACGGCGAGCCTGAGAGAGAAACGATATGGTTGAGTACTTTGGTGAGCAGCTTTCTGGTT
TTGCATTTACTGCCAATGGATGGGTGCAATCCTATGGATCCCGGTGTGTCAAGCCACCAATTAT
CTATGGTGATGTGAGCCGCCCCAACGCCATGACTGTGTTCTGGTCCAAGATGGCGCAGAGCATG
ACCTCTCGCCCCATGAAGGGAATGTTGACTGGTCCCGTCACAATCCTTAACTGGTCTTTTGTCA
GGAATGACCAGCCGAGGTCCAGGTTTGAGACATGCTACCAGATTGCTCTTGCCATCAAGAAGGA
GGTCGAGGACCTTGAGGCTGGTGGTATACAGGTTTTTACAGGTCATCCAAATCGATGAGGCTGC
TTTGAGAGAAGGTCTGCCCCTCCGCAAGGCGGAGCATGCTTTCTACTTGGACTGGGCTGTTCAC
TCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAG

Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs osi_circ_003541* osi_circ_010009
PMCS 1.087576342
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017