Plant Circular RNA Database

Detail information of Os12g0623950_circ_ag.14

			
						 General Information
					
						CircRNA Name
						Os12g0623950_circ_ag.14
					
						ID in PlantcircBase
						osa_circ_012392
					
						Alias
						Os_ciR839
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr12: 26649044-26660737  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						CIRI, find_circ
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							Os12g0623950_circ_ag.1 Os12g0623950_circ_g.1 Os12g0623950_circ_g.2 Os12g0623950_circ_ag.3 Os12g0623950_circ_g.4 Os12g0623950_circ_g.5 Os12g0623950_circ_g.6 Os12g0623950_circ_g.7 Os12g0623950_circ_ag.8 Os12g0623950_circ_ag.9 Os12g0623950_circ_ag.10 Os12g0623950_circ_g.11 Os12g0623950_circ_g.12 Os12g0623950_circ_ag.13 Os12g0623950_circ_ag.15 Os12g0623900_circ_g.1 Os12g0623900_circ_g.2 Os12g0623900_circ_g.3 Os12g0623900_circ_ag.1 Os12g0623900_circ_ag.2 Os12g0623900_circ_g.3 Os12g0623900_circ_g.4 Os12g0623900_circ_ag.5 Os12g0623900_circ_ag.6 Os12g0623900_circ_g.7 Os12g0623900_circ_ag.8 Os12g0623900_circ_g.9 Os12g0623900_circ_ag.10 Os12g0623900_circ_ag.11 Os12g0623900_circ_ag.12 Os12g0624000_circ_g.1 Os12g0624000_circ_g.2 Os12g0624000_circ_g.3 						
					
						Support reads
						4341/3
					
						Tissues
						root/anther
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	Os12g0623950_circ_ag.14
ID in PlantcircBase	osa_circ_012392
Alias	Os_ciR839
Organism	Oryza sativa
Position	chr12: 26649044-26660737 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ag-circRNA
Identification method	CIRI, find_circ
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	Os12g0623950_circ_ag.1 Os12g0623950_circ_g.1 Os12g0623950_circ_g.2 Os12g0623950_circ_ag.3 Os12g0623950_circ_g.4 Os12g0623950_circ_g.5 Os12g0623950_circ_g.6 Os12g0623950_circ_g.7 Os12g0623950_circ_ag.8 Os12g0623950_circ_ag.9 Os12g0623950_circ_ag.10 Os12g0623950_circ_g.11 Os12g0623950_circ_g.12 Os12g0623950_circ_ag.13 Os12g0623950_circ_ag.15 Os12g0623900_circ_g.1 Os12g0623900_circ_g.2 Os12g0623900_circ_g.3 Os12g0623900_circ_ag.1 Os12g0623900_circ_ag.2 Os12g0623900_circ_g.3 Os12g0623900_circ_g.4 Os12g0623900_circ_ag.5 Os12g0623900_circ_ag.6 Os12g0623900_circ_g.7 Os12g0623900_circ_ag.8 Os12g0623900_circ_g.9 Os12g0623900_circ_ag.10 Os12g0623900_circ_ag.11 Os12g0623900_circ_ag.12 Os12g0624000_circ_g.1 Os12g0624000_circ_g.2 Os12g0624000_circ_g.3
Support reads	4341/3
Tissues	root/anther
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CAAGCTCGATAGCGAGATTAAGTCATGGCTTGCTTTTGCTGCCCAAAAAGTGGTTGAGGTGAAT
GCCCTTGCTAAGGCATTGGCTGGACAGAAGGATGAGgcttactttgcagcaaacgctgctgctc
aggcctccaggaggtcatcacctcgtgtgacaaacgaggaagtccaaaaggctgtaagtacctt
gcgttttt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 2135
Transcript exons: 26649044-26649165,26649217-26649385,26649460-26649568,26
649712-26649969,26650055-26650328,26650406-26650624,2665
8604-26658827,26658925-26659014,26659745-26659886,266599
54-26660154,26660257-26660414,26660569-26660737
GCTTACTTTGCAGCAAACGCTGCTGCTCAGGCCTCCAGGAGGTCATCACCTCGTGTGACAAACG
AGGAAGTCCAAAAGGCTGTAAGTACCTTGCGTTTTTGGCCAGCATTTGCTGATTTCATGCTGCT
GCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCTAGACTGGACGCACAGCAGA
AGAAGCTCAACCTTCCAGTCCTTCCTACAACCACAATTGGTTCATTCCCACAGACTGTGGAGCT
CAGGAGAGTCCGCCGTGAGTACAAGGCAAAAAAGTAGGATCTCTGAGGAGGAGTACATCAGTGC
CATCAAGGAGGAAATCAGCAAGGTTGTTAAGATCCAGGAAGAGCTTGACATCGATGTCCTTGTT
CACGGCGAGCCTGAGGTCAGAGAAACGATATGGTTGAGTACTTCGGTGAGCAGCTTTCTGGTTT
TGCATTCACTGCCAACGGATGGGTGCAATCTTATGGATCACGGTGTGTCAAGCCACCAATTATC
TATGGTGATGTGAGCCGCCCCAACCCCATGACTGTGTTCTGGTCCAAGTTGGCGCAGAGCATGA
CCTCTCGCCCCATGAAGGGAATGTTGACTGGTCCCGTCACAATCCTTAACTGGTCTTTTGTCAG
GAATGACCAGCCGAGGTCAGGTTTGAGACATGCTACCAGATTGCTCTTGCCATCAAGAAGGAGG
TCGAGGACCTTGAGGCTGGTGGTATTCAGGTTGGTCCTGTTCTATAATTTGGTTCTCAAGAGAA
TCTTGCTTACGTTTTTTTAATGGTCCTTTGCAGGTCATCCAAATCGATGAGGCTGCTTTGAGAG
AAGGTCTGCCACTCCGCAAGGCGGAGCATGCTTTCTACTTGGACTGGGCTGTTCACTCCTTCAG
AATCACCAACTGCGGTGTTCAGGACACCACCCAGGTACAGATCCACACCCACATGTGCTACTCT
AACTTCAACGACATCATCCACTCCATCATCAACATGGACGCTGATGTGATCACCATCGAGAACT
CCCGGTCCGACGAGAAGCTGCTCTCCGTCTTCCGCGAGGGTGTGAAGTATGGTGCTGGCATTGG
CCCTGGTGTCTATGACATCCACTCCCCAAGGATCCCGTCCACAGAGGAGATTGCGGACCGCGTC
CAGCATCTGGAAGCAAATGGCTGACGCTGGGATCAAGTATATCCCCAGCAACACCTTCTCGTAC
TATGATCAGGTTCTTGACACGACCGCCATGCTTGGTGCTGTCCCAGAGCGCTACTCATGGACCG
GTGGAGAGATTGGGTTCAGCACCTACTTCTCGATGGCTAGGGGAAATGCCACTGTCCCTGCTAT
GGAGATGACCAAGTGGTTTGACACCAACTAGCCACTTTATCGTCCCTGAACTTGGTCCCAACAC
CAAGTTCTCCTACTCTTCCCACAAGGCTGTGAATGAATACAAGGAGGCCAAGGCGGTTCTTCAT
GCAGCTCGGCGTTGACACCGTGCCAGTACTTGTTGGACCAGTTTCATACTTGTTGCTCTCCAAG
CCTGCCAAGGGTGTAGAGAAGTCGTTCGCTCTTCTTTCCCTTCTCAGCAGCATCCTTCCTGTCT
ACAAGTATTTGTAGGGAGGTTATTGCTGAGTTGAAGGCAGCTGGTGCTACATGGATTCAGTTTG
ATGAGCCCACACTTGTTCTTGACCTTGACTCTCACCAATTGGCTGCATTCTCTGCAGCGTACAC
AGAACTCGAGTCGGCACTTTCTGGATTGAATGTGCTTATTGAGACATACTTCGCTGACATTCCT
GCTGAATCATACAAGTGACCCTCACATCCCTGAACAGCGTGACTGCTTATGGTTTTGACCTTAT
CCGTGGTTCCAAGACTCTTGACCTTGTCAAGAGTGCTGGTTTCCCCTCTGGCAAGTACCTCTTT
GCTGGTGTTGTGGATGGACGCAACATCTGGGCTGATGATCTCGCCGTGTAGACAAGCTTGTGGT
CTCGACTTCCTGCTCACTCATGCACACCGCTGTGGATCTTGTAAATGAGACCAAGCTCGATAGC
GAGATTAAGTCATGGCTTGCTTTTGCTGCCCAAAAAGTGGTTGAGGTGAATGCCCTTGCTAAGG
CATTGGCTGGACAGAAGGATGAG
						
					

						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.						
					

			
		

Sequences
Splice junction sequence	CAAGCTCGATAGCGAGATTAAGTCATGGCTTGCTTTTGCTGCCCAAAAAGTGGTTGAGGTGAAT GCCCTTGCTAAGGCATTGGCTGGACAGAAGGATGAGgcttactttgcagcaaacgctgctgctc aggcctccaggaggtcatcacctcgtgtgacaaacgaggaagtccaaaaggctgtaagtacctt gcgttttt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 2135 Transcript exons: 26649044-26649165,26649217-26649385,26649460-26649568,26 649712-26649969,26650055-26650328,26650406-26650624,2665 8604-26658827,26658925-26659014,26659745-26659886,266599 54-26660154,26660257-26660414,26660569-26660737 GCTTACTTTGCAGCAAACGCTGCTGCTCAGGCCTCCAGGAGGTCATCACCTCGTGTGACAAACG AGGAAGTCCAAAAGGCTGTAAGTACCTTGCGTTTTTGGCCAGCATTTGCTGATTTCATGCTGCT GCTCTGAAGGGGTCTGACCACCGCCGTGCTACCAATGTTAGCGCTAGACTGGACGCACAGCAGA AGAAGCTCAACCTTCCAGTCCTTCCTACAACCACAATTGGTTCATTCCCACAGACTGTGGAGCT CAGGAGAGTCCGCCGTGAGTACAAGGCAAAAAAGTAGGATCTCTGAGGAGGAGTACATCAGTGC CATCAAGGAGGAAATCAGCAAGGTTGTTAAGATCCAGGAAGAGCTTGACATCGATGTCCTTGTT CACGGCGAGCCTGAGGTCAGAGAAACGATATGGTTGAGTACTTCGGTGAGCAGCTTTCTGGTTT TGCATTCACTGCCAACGGATGGGTGCAATCTTATGGATCACGGTGTGTCAAGCCACCAATTATC TATGGTGATGTGAGCCGCCCCAACCCCATGACTGTGTTCTGGTCCAAGTTGGCGCAGAGCATGA CCTCTCGCCCCATGAAGGGAATGTTGACTGGTCCCGTCACAATCCTTAACTGGTCTTTTGTCAG GAATGACCAGCCGAGGTCAGGTTTGAGACATGCTACCAGATTGCTCTTGCCATCAAGAAGGAGG TCGAGGACCTTGAGGCTGGTGGTATTCAGGTTGGTCCTGTTCTATAATTTGGTTCTCAAGAGAA TCTTGCTTACGTTTTTTTAATGGTCCTTTGCAGGTCATCCAAATCGATGAGGCTGCTTTGAGAG AAGGTCTGCCACTCCGCAAGGCGGAGCATGCTTTCTACTTGGACTGGGCTGTTCACTCCTTCAG AATCACCAACTGCGGTGTTCAGGACACCACCCAGGTACAGATCCACACCCACATGTGCTACTCT AACTTCAACGACATCATCCACTCCATCATCAACATGGACGCTGATGTGATCACCATCGAGAACT CCCGGTCCGACGAGAAGCTGCTCTCCGTCTTCCGCGAGGGTGTGAAGTATGGTGCTGGCATTGG CCCTGGTGTCTATGACATCCACTCCCCAAGGATCCCGTCCACAGAGGAGATTGCGGACCGCGTC CAGCATCTGGAAGCAAATGGCTGACGCTGGGATCAAGTATATCCCCAGCAACACCTTCTCGTAC TATGATCAGGTTCTTGACACGACCGCCATGCTTGGTGCTGTCCCAGAGCGCTACTCATGGACCG GTGGAGAGATTGGGTTCAGCACCTACTTCTCGATGGCTAGGGGAAATGCCACTGTCCCTGCTAT GGAGATGACCAAGTGGTTTGACACCAACTAGCCACTTTATCGTCCCTGAACTTGGTCCCAACAC CAAGTTCTCCTACTCTTCCCACAAGGCTGTGAATGAATACAAGGAGGCCAAGGCGGTTCTTCAT GCAGCTCGGCGTTGACACCGTGCCAGTACTTGTTGGACCAGTTTCATACTTGTTGCTCTCCAAG CCTGCCAAGGGTGTAGAGAAGTCGTTCGCTCTTCTTTCCCTTCTCAGCAGCATCCTTCCTGTCT ACAAGTATTTGTAGGGAGGTTATTGCTGAGTTGAAGGCAGCTGGTGCTACATGGATTCAGTTTG ATGAGCCCACACTTGTTCTTGACCTTGACTCTCACCAATTGGCTGCATTCTCTGCAGCGTACAC AGAACTCGAGTCGGCACTTTCTGGATTGAATGTGCTTATTGAGACATACTTCGCTGACATTCCT GCTGAATCATACAAGTGACCCTCACATCCCTGAACAGCGTGACTGCTTATGGTTTTGACCTTAT CCGTGGTTCCAAGACTCTTGACCTTGTCAAGAGTGCTGGTTTCCCCTCTGGCAAGTACCTCTTT GCTGGTGTTGTGGATGGACGCAACATCTGGGCTGATGATCTCGCCGTGTAGACAAGCTTGTGGT CTCGACTTCCTGCTCACTCATGCACACCGCTGTGGATCTTGTAAATGAGACCAAGCTCGATAGC GAGATTAAGTCATGGCTTGCTTTTGCTGCCCAAAAAGTGGTTGAGGTGAATGCCCTTGCTAAGG CATTGGCTGGACAGAAGGATGAG
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						1.105104379

Conservation Information
Conserved circRNAs	NA
PMCS	1.105104379

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os12g0623950_circ_ag.14

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