Detail information of AT2G05710_circ_g.13


General Information
CircRNA Name AT2G05710_circ_g.13
ID in PlantcircBase ath_circ_012899
Alias 2:2144143-2144923
Organism Arabidpsis thaliana
Position chr2: 2144143-2144923  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G05710
Parent gene annotation Aconitate hydratase 3, mitochondrial
Parent gene strand +
Alternative splicing AT2G05710_circ_g.6 AT2G05710_circ_g.7 AT2G05710_circ_g.8 AT2G05710_circ_g.9 AT2G05710_circ_g.10 AT2G05710_circ_g.11 AT2G05710_circ_g.12 AT2G05710_circ_g.14 AT2G05710_circ_g.15 AT2G05710_circ_g.16 AT2G05710_circ_g.17
Support reads 2
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G05710.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCCGGTAACAGGAACTTTGAGGGGCGTGTTCATCCACTAACAAGAGCCAATTACCTTGCATCT
CCTCCGTTGGTGGTTGCCTATGCTCTTGCTGGCACGggttttgctatacctaaagaggcacaag
aaaaagtggtaaatttttcgttcgatggacaaccagcagagcttaaacatggaagtgtggtgat
tgctgcaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 495
Transcript exons: 2144143-2144328,2144411-2144478,2144571-2144689,2144802-
2144923
GGTTTTGCTATACCTAAAGAGGCACAAGAAAAAGTGGTAAATTTTTCGTTCGATGGACAACCAG
CAGAGCTTAAACATGGAAGTGTGGTGATTGCTGCAATCACAAGCTGTACTAATACATCAAATCC
CAGCGTCATGCTTGGTGCTGGTCTTGTTGCAAAGAAGGCTTGTGACCTTGGGCTACAGGTTAAG
CCTTGGATAAAGACAAGTCTTGCTCCAGGCTCAGGAGTTGTTACAAAATACTTATTAAAGAGTG
GATTGCAAGAATATCTGAATGAACAGGGTTTCAATATTGTCGGCTACGGGTGCACTACATGCAT
CGGGAATTCTGGGGAAATTAATGAATCAGTGGGAGCTGCTATTACCGAAAATGACATTGTGGCG
GCTGCTGTGCTATCCGGTAACAGGAACTTTGAGGGGCGTGTTCATCCACTAACAAGAGCCAATT
ACCTTGCATCTCCTCCGTTGGTGGTTGCCTATGCTCTTGCTGGCACG

Genomic sequence GGTTTTGCTATACCTAAAGAGGCACAAGAAAAAGTGGTAAATTTTTCGTTCGATGGACAACCAG
CAGAGCTTAAACATGGAAGTGTGGTGATTGCTGCAATCACAAGCTGTACTAATACATCAAATCC
CAGCGTCATGCTTGGTGCTGGTCTTGTTGCAAAGAAGGCTTGTGACCTTGGGCTACAGGTTGGT
TTCACGAGAGCAAACTAGAAATCTATCTGATGCCTCGACATTTTCTGATCCCTTTTTCAAAAAC
TTGCCTCTGTAGGTTAAGCCTTGGATAAAGACAAGTCTTGCTCCAGGCTCAGGAGTTGTTACAA
AATACTTATTAAAGAGGTATGTCGTATTTTTATCTAGTTCTTCGTTGTTAAAGGCTAATTCTTT
CTTATGTGATGGTAAATTTAAGTGTAACATCTTACTCCATGCAGTGGATTGCAAGAATATCTGA
ATGAACAGGGTTTCAATATTGTCGGCTACGGGTGCACTACATGCATCGGGAATTCTGGGGAAAT
TAATGAATCAGTGGGAGCTGCTATTACCGAAAATGGTATTATTGAGATTCCCAACTAAACTTAC
TTTGGACTTTCCATCCTTTATATTACTATTATATATAAGTAAGTAGCTGATTTGTTTTCAATAT
TTGTGTTGCTTGGTTTTAGACATTGTGGCGGCTGCTGTGCTATCCGGTAACAGGAACTTTGAGG
GGCGTGTTCATCCACTAACAAGAGCCAATTACCTTGCATCTCCTCCGTTGGTGGTTGCCTATGC
TCTTGCTGGCACG
Conservation Information
Conserved circRNAs NA
PMCS 0.318258967
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020