Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT2G05710_circ_g.10 |
ID in PlantcircBase | ath_circ_012896 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr2: 2143771-2144328 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | AT2G05710 |
Parent gene annotation |
Aconitate hydratase 3, mitochondrial |
Parent gene strand | + |
Alternative splicing | AT2G05710_circ_g.6 AT2G05710_circ_g.7 AT2G05710_circ_g.8 AT2G05710_circ_g.9 AT2G05710_circ_g.11 AT2G05710_circ_g.12 AT2G05710_circ_g.13 AT2G05710_circ_g.14 AT2G05710_circ_g.15 AT2G05710_circ_g.16 AT2G05710_circ_g.17 |
Support reads | 2 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT2G05710.1:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.295297159 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2143964-2144325(+) |
Potential amino acid sequence |
MKADWHSCLDSKVGFKGFAIPKEAQEKVVNFSFDGQPAELKHGSVVIAAITSCTNTSNPSVMLG AGLVAKKACDLGLQPQQDRVYSSYLELNLDDVEPCISGPKRPHDRVTLKEMKADWHSCLDSKVG FKGFAIPKEAQEKVVNFSFDGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACDLGLQ PQQDRVYSSYLELNLDDVEPCISGPKRPHDRVTLKEMKADWHSCLDSKVGFKGFAIPKEAQEKV VNFSFDGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACDLGLQPQQDRVYSSYLELN LDDVEPCISGPKRPHDRVTLKEMKADWHSCLDSKVGFKGFAIPKEAQEKVVNFSFDGQPAELKH GSVVIAAITSCTNTSNPSVMLGAGLVAKKACDLGLQ(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |