Detail information of AT2G05710_circ_g.10


General Information
CircRNA Name AT2G05710_circ_g.10
ID in PlantcircBase ath_circ_012896
Alias NA
Organism Arabidpsis thaliana
Position chr2: 2143771-2144328  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT2G05710
Parent gene annotation Aconitate hydratase 3, mitochondrial
Parent gene strand +
Alternative splicing AT2G05710_circ_g.6 AT2G05710_circ_g.7 AT2G05710_circ_g.8 AT2G05710_circ_g.9 AT2G05710_circ_g.11 AT2G05710_circ_g.12 AT2G05710_circ_g.13 AT2G05710_circ_g.14 AT2G05710_circ_g.15 AT2G05710_circ_g.16 AT2G05710_circ_g.17
Support reads 2
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G05710.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTGATTGCTGCAATCACAAGCTGTACTAATACATCAAATCCCAGCGTCATGCTTGGTGCTGGT
CTTGTTGCAAAGAAGGCTTGTGACCTTGGGCTACAGcctcagcaagaccgggtttactcgtcat
atctagaactgaatctggatgatgttgaaccttgcatttctggaccaaagcggtatgggttctg
ttggtttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCAGCAAGACCGGGTTTACTCGTCATATCTAGAACTGAATCTGGATGATGTTGAACCTTGCA
TTTCTGGACCAAAGCGGTATGGGTTCTGTTGGTTTTTGTAATCGCGAAGTTTATTGTCTGAATA
ATTGGTCATGACCATATTATTGATATCTTCTTTGCAGGCCACATGATCGTGTTACTTTGAAGGA
AATGAAAGCTGACTGGCATTCATGTCTTGACAGTAAAGTTGGGTTCAAGGTATGTAACTGGATG
TTTCACTTTGTGGATGTCTAATCTCTTAACCATTTACTCGTTCTATAGACTGGGTTGTTGGTGC
ACATTTTGGAAATCAATGTTTATTTCTGAATATTGCTATTCATTCTCCGCAGGGTTTTGCTATA
CCTAAAGAGGCACAAGAAAAAGTGGTAAATTTTTCGTTCGATGGACAACCAGCAGAGCTTAAAC
ATGGAAGTGTGGTGATTGCTGCAATCACAAGCTGTACTAATACATCAAATCCCAGCGTCATGCT
TGGTGCTGGTCTTGTTGCAAAGAAGGCTTGTGACCTTGGGCTACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.295297159
Functional Information
Coding potential Y
Potential coding position 2143964-2144325(+)
Potential amino acid sequence MKADWHSCLDSKVGFKGFAIPKEAQEKVVNFSFDGQPAELKHGSVVIAAITSCTNTSNPSVMLG
AGLVAKKACDLGLQPQQDRVYSSYLELNLDDVEPCISGPKRPHDRVTLKEMKADWHSCLDSKVG
FKGFAIPKEAQEKVVNFSFDGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACDLGLQ
PQQDRVYSSYLELNLDDVEPCISGPKRPHDRVTLKEMKADWHSCLDSKVGFKGFAIPKEAQEKV
VNFSFDGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACDLGLQPQQDRVYSSYLELN
LDDVEPCISGPKRPHDRVTLKEMKADWHSCLDSKVGFKGFAIPKEAQEKVVNFSFDGQPAELKH
GSVVIAAITSCTNTSNPSVMLGAGLVAKKACDLGLQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017