Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA033133_circ_g.4 |
ID in PlantcircBase | osi_circ_002857 |
Alias | 10:16654186|16660619 |
Organism | Oryza sativa ssp. indica |
Position | chr10: 16654186-16660619 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA033133 |
Parent gene annotation | NA |
Parent gene strand | + |
Alternative splicing | BGIOSGA033133_circ_g.1 BGIOSGA033133_circ_g.2 BGIOSGA033133_circ_g.3 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | BGIOSGA033133-TA:13 |
Conservation Information | |
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Conserved circRNAs | osa_circ_007131* |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
16654223-16660616(+) |
Potential amino acid sequence |
METQIFCSQTLRSKVQRDFEELPSEAFRPLQDSLYALLKKFSKGPQKVRTQICIAMAALAVHVP VEDWGGGGIVNWLSDEMNSQQDFIPSFLELLTVLPQECSSHKIAARPERRRQFENDLRSSAEVA LSLLTACLGIDQLKEQVLEGFASWLRFCHGFYKNKVQFPVTSELIHFTVSRESNGITEQLPLIQ VLIPYVMGLKEQLKDSSKDEEDVKAIARLLADMGDSYVELIAAGSDDAMQIVNALLEVTSHSEF DISSMTFNFWHHLMRNLTDRGSYASYGSEVSINTERNRRLQLFRQPFEILVSLVSFRVEYPELY HTFSEEDQRDFRHSRYAVSDVLLDATDVLGGDPTLKILFTKLIQVADSLLHDESSNMETQIFCS QTLRSKVQRDFEELPSEAFRPLQDSLYALLKKFSKGPQKVRTQICIAMAALAVHVPVEDWGGGG IVNWLSDEMNSQQDFIPSFLELLTVLPQECSSHKIAARPERRRQFENDLRSSAEVALSLLTACL GIDQLKEQVLEGFASWLRFCHGFYKNKVQFPVTSELIHFTVSRESNGITEQLPLIQVLIPYVMG LKEQLKDSSKDEEDVKAIARLLADMGDSYVELIAAGSDDAMQIVNALLEVTSHSEFDISSMTFN FWHHLMRNLTDRGSYASYGSEVSINTERNRRLQLFRQPFEILVSLVSFRVEYPELYHTFSEEDQ RDFRHSRYAVSDVLLDATDVLGGDPTLKILFTKLIQVADSLLHDESSNMETQIFCSQTLRSKVQ RDFEELPSEAFRPLQDSLYALLKKFSKGPQKVRTQICIAMAALAVHVPVEDWGGGGIVNWLSDE MNSQQDFIPSFLELLTVLPQECSSHKIAARPERRRQFENDLRSSAEVALSLLTACLGIDQLKEQ VLEGFASWLRFCHGFYKNKVQFPVTSELIHFTVSRESNGITEQLPLIQVLIPYVMGLKEQLKDS SKDEEDVKAIARLLADMGDSYVELIAAGSDDAMQIVNALLEVTSHSEFDISSMTFNFWHHLMRN LTDRGSYASYGSEVSINTERNRRLQLFRQPFEILVSLVSFRVEYPELYHTFSEEDQRDFRHSRY AVSDVLLDATDVLGGDPTLKILFTKLIQVADSLLHDESSNMETQIFCSQTLRSKVQRDFEELPS EAFRPLQDSLYALLKKFSKGPQKVRTQICIAMAALAVHVPVEDWGGGGIVNWLSDEMNSQQDFI PSFLELLTVLPQECSSHKIAARPERRRQFENDLRSSAEVALSLLTACLGIDQLKEQVLEGFASW LRFCHGFYKNKVQFPVTSELIHFTVSRESNGITEQLPLIQVLIPYVMGLKEQLKDSSKDEEDVK AIARLLADMGDSYVELIAAGSDDAMQIVNALLEVTSHSEFDISSMTFNFWHHLMRNLTDRGSYA SYGSEVSINTERNRRLQLFRQPFEILVSLVSFRVEYPELYHTFSEEDQRDFRHSRYAVSDVLLD ATDVLGGDPTLKILFTKLIQ(+) |
Sponge-miRNAs | osa-miR1856 |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |