Detail information of BGIOSGA033133_circ_g.4


General Information
CircRNA Name BGIOSGA033133_circ_g.4
ID in PlantcircBase osi_circ_002857
Alias 10:16654186|16660619
Organism Oryza sativa ssp. indica
Position chr10: 16654186-16660619  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA033133
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033133_circ_g.1 BGIOSGA033133_circ_g.2 BGIOSGA033133_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA033133-TA:13
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATCCATTTTTCTTCAGCGGTTAGTGATGTATTACTTGACGCAACTGATGTTCTTGGAGGTGAT
CCGACGCTGAAAATACTTTTCACGAAGCTGATCCAGgtagctgacagcttacttcatgatgaaa
gtagtaatatggagactcaaatcttctgctctcaaaccctcagaagcaaggtaaataaattgat
atgtatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs osa_circ_007131*
PMCS
Functional Information
Coding potential Y
Potential coding position 16654223-16660616(+)
Potential amino acid sequence METQIFCSQTLRSKVQRDFEELPSEAFRPLQDSLYALLKKFSKGPQKVRTQICIAMAALAVHVP
VEDWGGGGIVNWLSDEMNSQQDFIPSFLELLTVLPQECSSHKIAARPERRRQFENDLRSSAEVA
LSLLTACLGIDQLKEQVLEGFASWLRFCHGFYKNKVQFPVTSELIHFTVSRESNGITEQLPLIQ
VLIPYVMGLKEQLKDSSKDEEDVKAIARLLADMGDSYVELIAAGSDDAMQIVNALLEVTSHSEF
DISSMTFNFWHHLMRNLTDRGSYASYGSEVSINTERNRRLQLFRQPFEILVSLVSFRVEYPELY
HTFSEEDQRDFRHSRYAVSDVLLDATDVLGGDPTLKILFTKLIQVADSLLHDESSNMETQIFCS
QTLRSKVQRDFEELPSEAFRPLQDSLYALLKKFSKGPQKVRTQICIAMAALAVHVPVEDWGGGG
IVNWLSDEMNSQQDFIPSFLELLTVLPQECSSHKIAARPERRRQFENDLRSSAEVALSLLTACL
GIDQLKEQVLEGFASWLRFCHGFYKNKVQFPVTSELIHFTVSRESNGITEQLPLIQVLIPYVMG
LKEQLKDSSKDEEDVKAIARLLADMGDSYVELIAAGSDDAMQIVNALLEVTSHSEFDISSMTFN
FWHHLMRNLTDRGSYASYGSEVSINTERNRRLQLFRQPFEILVSLVSFRVEYPELYHTFSEEDQ
RDFRHSRYAVSDVLLDATDVLGGDPTLKILFTKLIQVADSLLHDESSNMETQIFCSQTLRSKVQ
RDFEELPSEAFRPLQDSLYALLKKFSKGPQKVRTQICIAMAALAVHVPVEDWGGGGIVNWLSDE
MNSQQDFIPSFLELLTVLPQECSSHKIAARPERRRQFENDLRSSAEVALSLLTACLGIDQLKEQ
VLEGFASWLRFCHGFYKNKVQFPVTSELIHFTVSRESNGITEQLPLIQVLIPYVMGLKEQLKDS
SKDEEDVKAIARLLADMGDSYVELIAAGSDDAMQIVNALLEVTSHSEFDISSMTFNFWHHLMRN
LTDRGSYASYGSEVSINTERNRRLQLFRQPFEILVSLVSFRVEYPELYHTFSEEDQRDFRHSRY
AVSDVLLDATDVLGGDPTLKILFTKLIQVADSLLHDESSNMETQIFCSQTLRSKVQRDFEELPS
EAFRPLQDSLYALLKKFSKGPQKVRTQICIAMAALAVHVPVEDWGGGGIVNWLSDEMNSQQDFI
PSFLELLTVLPQECSSHKIAARPERRRQFENDLRSSAEVALSLLTACLGIDQLKEQVLEGFASW
LRFCHGFYKNKVQFPVTSELIHFTVSRESNGITEQLPLIQVLIPYVMGLKEQLKDSSKDEEDVK
AIARLLADMGDSYVELIAAGSDDAMQIVNALLEVTSHSEFDISSMTFNFWHHLMRNLTDRGSYA
SYGSEVSINTERNRRLQLFRQPFEILVSLVSFRVEYPELYHTFSEEDQRDFRHSRYAVSDVLLD
ATDVLGGDPTLKILFTKLIQ(+)
Sponge-miRNAs osa-miR1856
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021