Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT5G01920_circ_g.2 |
ID in PlantcircBase | ath_circ_035946 |
Alias | Chr5:359783|360446 |
Organism | Arabidpsis thaliana |
Position | chr5: 359783-360446 JBrowse» |
Reference genome | TAIR10.38 |
Type | ei-circRNA |
Identification method | CIRCexplorer; CIRI |
Parent gene | AT5G01920 |
Parent gene annotation |
Serine/threonine-protein kinase STN8, chloroplastic |
Parent gene strand | + |
Alternative splicing | AT5G01920_circ_g.3 AT5G01920_circ_g.4 AT5G01920_circ_g.5 |
Support reads | 4 |
Tissues | seedling |
Exon boundary | No-Yes |
Splicing signals | GT-CA |
Number of exons covered | AT5G01920.1:2 AT5G01920.2:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.235375891 |
Functional Information | |
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Coding potential | NA |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | th-miR861-5p NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to methyl jasmonate (validated) |
Other Information | |
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References | Zhang et al., 2020 |