Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT5G01920_circ_g.5 |
ID in PlantcircBase | ath_circ_035949 |
Alias | At_ciR1444, Ath_circ_FC3103 |
Organism | Arabidpsis thaliana |
Position | chr5: 360042-360446 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder, circRNA_finder, find_circ, CIRI-full |
Parent gene | AT5G01920 |
Parent gene annotation |
Serine/threonine-protein kinase STN8, chloroplastic |
Parent gene strand | + |
Alternative splicing | AT5G01920_circ_g.2 AT5G01920_circ_g.3 AT5G01920_circ_g.4 |
Support reads | 13/25/9 |
Tissues | leaf/whole_plant/seedlings |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT5G01920.1:1 AT5G01920.2:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.545218961 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
360066-360443(+) |
Potential amino acid sequence |
MKDRSFPSNLESIMFGRVLQGVESVKRRALIIKQIMRQIITSLRKIHGTGIVHRDVKPANLVVT KKGQIKLIDFGAAADLRIGKNYIPERTLLDPDYCPPELYVLPEETPSPPPEPIAALLSPILWQG DRDLADYMKDRSFPSNLESIMFGRVLQGVESVKRRALIIKQIMRQIITSLRKIHGTGIVHRDVK PANLVVTKKGQIKLIDFGAAADLRIGKNYIPERTLLDPDYCPPELYVLPEETPSPPPEPIAALL SPILWQGDRDLADYMKDRSFPSNLESIMFGRVLQGVESVKRRALIIKQIMRQIITSLRKIHGTG IVHRDVKPANLVVTKKGQIKLIDFGAAADLRIGKNYIPERTLLDPDYCPPELYVLPEETPSPPP EPIAALLSPILWQGDRDLADYMKDRSFPSNLESIMFGRVLQGVESVKRRALIIKQIMRQIITSL RKIHGTGIVHRDVKPANLVVTKKGQIKLIDFGAAADLRIGKNYIPERTLLDPDYCPPELYVLPE ETPSPPPEPIAALLSPILWQ(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to heat stress |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017;Pan et al., 2017;Chen et al., 2017a |