Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d019947_circ_g.9 |
ID in PlantcircBase | zma_circ_002511 |
Alias | circ1178 |
Organism | Zea mays |
Position | chr7: 78832055-78832805 JBrowse» |
Reference genome | AGPv4.38 |
Type | ui-circRNA |
Identification method | CIRI |
Parent gene | Zm00001d019947 |
Parent gene annotation |
hydrolases acting on ester bonds |
Parent gene strand | + |
Alternative splicing | Zm00001d019947_circ_g.2 Zm00001d019947_circ_g.3 Zm00001d019947_circ_g.4 Zm00001d019947_circ_g.5 Zm00001d019947_circ_g.6 Zm00001d019947_circ_g.7 Zm00001d019947_circ_g.8 |
Support reads | 3 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | GT-CA |
Number of exons covered | Zm00001d019947_T023:3 Zm00001d019947_T032:2 Zm00001d019947_T022:3 Zm00001d019947_T015:3 Zm00001d019947_T016:3 Zm00001d019947_T014:3 Zm00001d019947_T002:2 Zm00001d019947_T010:3 Zm00001d019947_T040:2 Zm00001d019947_T012:3 Zm00001d019947_T019:3 Zm00001d019947_T025:3 Zm00001d019947_T004:3 Zm00001d019947_T030:3 Zm00001d019947_T007:3 Zm00001d019947_T028:3 Zm00001d019947_T037:3 Zm00001d019947_T017:3 Zm00001d019947_T041:3 Zm00001d019947_T024:3 Zm00001d019947_T033:3 Zm00001d019947_T006:2 Zm00001d019947_T013:3 Zm00001d019947_T035:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.477690923 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |