Detail information of Os11g0703400_circ_g.1


General Information
CircRNA Name Os11g0703400_circ_g.1
ID in PlantcircBase osa_circ_010087
Alias NA
Organism Oryza sativa
Position chr11: 28786529-28787800  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0703400
Parent gene annotation Similar to BRI1-KD interacting protein 109. (Os11t0703400-01);Si
milar to BRI1-KD interacting protein 109. (Os11t0703400-02)
Parent gene strand -
Alternative splicing Os11g0703400_circ_g.2
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0703400-01:3
Os11t0703400-02:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGGCGATGAGCTTCTTCTCCTGAGCCTGCAGGCCCTGCCTCTCCCTCTCGATCTCCCTGATGG
ATTTATCCAGCATCCGCTTGTTCTCCCGCAGCAACTctctgagttgacgtcgatgccaatttcg
tcaaggacctggtttaccagttcttctgtttcttcctcctcctcatcgccctccaaagcatcgt
caatggca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTGAGTTGACGTCGATGCCAATTTCGTCAAGGACCTGGTTTACCAGTTCTTCTGTTTCTTCC
TCCTCCTCATCGCCCTCCAAAGCATCGTCAATGGCATCATTCATTGTGCTACTGACTATCTCCA
TCTTCTCGTTTTGTATCTCAAACTCCCGCATTATCTTCTGCAGAGCTGGTAGATTCATCTGCCT
GTTCATCTGTCTCATGGCTTTTGTGACACCCTTCATGGCCTCACCCATAGCTTGTGTCGATTTC
AATGTCTGCAAGCATTCAGTAACAGCCATTAGGAGATTTTGCACAAAAATAGTTTGGGTTGTTA
AGAAAAAGGTCAGTTATCTGAATTTGGTAAGACTGTTCTTATCACAATTTACGGATAGAATAAT
CCGCTTAAATGCCCGAACAGAACTATAGCACCTGCTTGACTGAGATAATTACCTGAATTCGAAG
AGATACACCCTGTAGCTGGGACTTGAGGGCATAGAATTTTGTGATCTGATGTCTTGTGCGGATA
AGGTCCTTTGCCATAATTTTTACGGCTCCCTGTGAAAAATGTTAAAGGGCATCAAAACATATGC
CACAACCGATGATCACTAAAAGCAAGCATTTGGAGTTCTTTTTCTCTTTTTAATTTCATGTTGG
GCTTTGAGTTACAAGCAGCACAAAAACTATAACTTAGCCTTAAGGGGACAAAGGTAAATTCTAT
GAAATAGAAATTCATCAAACAGATCCTGACAGAAATTCTGCTTTCTCCTAACAGAACATGTCAA
CAACAAACAAAAGCCTGTAACTGATAATCTCAACCAGATTAAATTGGTTAGATTTAACCAATGT
GAAGCAATCCTATGCAAATAAATGTAAGCAATGGGAACTGGAGAGTAGAATAAGATAATGTGTA
TGATACATTTTTAGACCTCATAACATCTGCCAAGCTACTGTGCGAAATTGCCTAATCAAGGAAG
AAATGTAACACCAAGCCATCTATTGTATAAGGTATGGTGGGGATTTTTATCAGACATAAAGCTT
AGTATGTTGGCATTCAGTAAAGTATGTGACAAGGTTGAATCGAATGAAACTATTGATGAATATG
ATGGGAGTATGAAATCATAAGTGAGGGAAGGCAATGAGTTTGGGGGGGCGCACCATCTGTCCTT
GCTTGGCCACCTTCTTGATCTCGGCGATGAGCTTCTTCTCCTGAGCCTGCAGGCCCTGCCTCTC
CCTCTCGATCTCCCTGATGGATTTATCCAGCATCCGCTTGTTCTCCCGCAGCAACT
Conservation Information
Conserved circRNAs ath_circ_012979*
PMCS 0.191509296
Functional Information
Coding potential Y
Potential coding position 28787026-28786965(+)
28787779-28787062(-)
Potential amino acid sequence MSCADKVLCHNFYGSHLSLLGHLLDLGDELLLLSLQALPLPLDLPDGFIQHPLVLPQQLSELTS
MPISSRTWFTSSSVSSSSSSPSKASSMASFIVLLTISIFSFCISNSRIIFCRAGRFICLFICLM
AFVTPFMASPIACVDFNV*(+)
MLDKSIREIERERQGLQAQEKKLIAEIKKVAKQGQMGAVKIMAKDLIRTRHQITKFYALKSQLQ
GVSLRIQTLKSTQAMGEAMKGVTKAMRQMNRQMNLPALQKIMREFEIQNEKMEIVSSTMNDAID
DALEGDEEEEETEELVNQVLDEIGIDVNSESCCGRTSGCWINPSGRSRGRGRACRLRRRSSSPR
SRRWPSKDRWEP*(-)
Sponge-miRNAs osa-miR1435
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017