Detail information of Os11g0703400_circ_g.2


General Information
CircRNA Name Os11g0703400_circ_g.2
ID in PlantcircBase osa_circ_010088
Alias NA
Organism Oryza sativa
Position chr11: 28786965-28787800  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0703400
Parent gene annotation Similar to BRI1-KD interacting protein 109. (Os11t0703400-01);Si
milar to BRI1-KD interacting protein 109. (Os11t0703400-02)
Parent gene strand -
Alternative splicing Os11g0703400_circ_g.1
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0703400-01:2
Os11t0703400-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGGCGATGAGCTTCTTCTCCTGAGCCTGCAGGCCCTGCCTCTCCCTCTCGATCTCCCTGATGG
ATTTATCCAGCATCCGCTTGTTCTCCCGCAGCAACTctgaattcgaagagatacaccctgtagc
tgggacttgagggcatagaattttgtgatctgatgtcttgtgcggataaggtcctttgccataa
tttttacg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAATTCGAAGAGATACACCCTGTAGCTGGGACTTGAGGGCATAGAATTTTGTGATCTGATGT
CTTGTGCGGATAAGGTCCTTTGCCATAATTTTTACGGCTCCCTGTGAAAAATGTTAAAGGGCAT
CAAAACATATGCCACAACCGATGATCACTAAAAGCAAGCATTTGGAGTTCTTTTTCTCTTTTTA
ATTTCATGTTGGGCTTTGAGTTACAAGCAGCACAAAAACTATAACTTAGCCTTAAGGGGACAAA
GGTAAATTCTATGAAATAGAAATTCATCAAACAGATCCTGACAGAAATTCTGCTTTCTCCTAAC
AGAACATGTCAACAACAAACAAAAGCCTGTAACTGATAATCTCAACCAGATTAAATTGGTTAGA
TTTAACCAATGTGAAGCAATCCTATGCAAATAAATGTAAGCAATGGGAACTGGAGAGTAGAATA
AGATAATGTGTATGATACATTTTTAGACCTCATAACATCTGCCAAGCTACTGTGCGAAATTGCC
TAATCAAGGAAGAAATGTAACACCAAGCCATCTATTGTATAAGGTATGGTGGGGATTTTTATCA
GACATAAAGCTTAGTATGTTGGCATTCAGTAAAGTATGTGACAAGGTTGAATCGAATGAAACTA
TTGATGAATATGATGGGAGTATGAAATCATAAGTGAGGGAAGGCAATGAGTTTGGGGGGGCGCA
CCATCTGTCCTTGCTTGGCCACCTTCTTGATCTCGGCGATGAGCTTCTTCTCCTGAGCCTGCAG
GCCCTGCCTCTCCCTCTCGATCTCCCTGATGGATTTATCCAGCATCCGCTTGTTCTCCCGCAGC
AACT
Conservation Information
Conserved circRNAs NA
PMCS 0.144537679
Functional Information
Coding potential Y
Potential coding position 28787026-28786965(+)
28787762-28786999(+)
28787010-28787769(-)
28787779-28787062(-)
Potential amino acid sequence MSCADKVLCHNFYGSHLSLLGHLLDLGDELLLLSLQALPLPLDLPDGFIQHPLVLPQQL*(+)
MDLSSIRLFSRSNSEFEEIHPVAGT*(+)
MPSSPSYRVYLFEFRVAAGEQADAG*(-)
MLDKSIREIERERQGLQAQEKKLIAEIKKVAKQGQMGAVKIMAKDLIRTRHQITKFYALKSQLQ
GVSLRIQSCCGRTSGCWINPSGRSRGRGRACRLRRRSSSPRSRRWPSKDRWEP*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017