Plant Circular RNA Database

Detail information of 3_circ_ag.8

			
						 General Information
					
						CircRNA Name
						3_circ_ag.8
					
						ID in PlantcircBase
						ath_circ_024171
					
						Alias
						3:10450707-10454844
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr3: 10450707-10454844  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							AT3G28070_circ_g.1 3_circ_ag.2 3_circ_ag.3 3_circ_ag.4 3_circ_ag.5 3_circ_ag.6 AT3G28070_circ_g.7 3_circ_ag.9 3_circ_ag.10 AT3G28080_circ_g.1 3_circ_ag.2 AT3G28100_circ_g.1 						
					
						Support reads
						1/1
					
						Tissues
						seedling;flower
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	3_circ_ag.8
ID in PlantcircBase	ath_circ_024171
Alias	3:10450707-10454844
Organism	Arabidpsis thaliana
Position	chr3: 10450707-10454844 JBrowse»
Reference genome	TAIR10.38
Type	ag-circRNA
Identification method	find_circ; CIRI2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	AT3G28070_circ_g.1 3_circ_ag.2 3_circ_ag.3 3_circ_ag.4 3_circ_ag.5 3_circ_ag.6 AT3G28070_circ_g.7 3_circ_ag.9 3_circ_ag.10 AT3G28080_circ_g.1 3_circ_ag.2 AT3G28100_circ_g.1
Support reads	1/1
Tissues	seedling;flower
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ACAAAAGACCTCTATACTTAGCGATATTTAAGCCTCTGTCTATTTTGATAGCAGTGGTTATGGG
GACCATTTTTCTCAACGATTCTCTCTATCTCGGATGtttgatcggaggaattttgataacatta
ggcttttacgctgtgatgtggggcaaagcaaacgaagagaaggatcagttatcattttcagaaa
aagagaaa

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							TTTGATCGGAGGAATTTTGATAACATTAGGCTTTTACGCTGTGATGTGGGGCAAAGCAAACGAA
GAGAAGGATCAGTTATCATTTTCAGAAAAAGAGAAAACGCCTCTTCTATTAAACCGCAAAAACG
ACCAAGTTTAAAAAGAAAAAGAATATAGACAATAAAACTACTAATAGTTAACAAATACTGTTAT
TAATACCATATTTATAAAATTGTCTTATGTCTCTATGAACCTAGGAGTTGGAAAAAAATGTGTG
TATTTAGATTTTTTTTTCAAAATACTCCAACATTTATAAATACGAGTTAACATTTTTCCTTGAC
TCCTTTGGAACATATGAAAAGCTTAAATTGATATTCTTTGAAGCAATGATAGGTAACTGCACCA
AGTATATATCCCGGTATAGTCACACATCCCAAGTTTAGTGAACTACACGAATTATGTGTATTGT
ATGCTAATGTATACCAATTAGTAACATATGATCAACACCATCATATTCCTTTTACACCGTTTGT
CAAATCCATTTTTAAAACCACTTTTGGTGAATTACGCCGTAGAAAAACAAGTCTAACACATTGT
AACATTTTGAAGTGGTAATAAAATTTCTGATTCAAGGTTTCAATATCTATAATTATTGAAGTGG
TTTCAATATCCATTATTGGATGATCATATTTTGGCACAACTGTTTTCAAGTCTGCGCAAAGAAT
AGGGAATCTTATAATAAATTCAAGAAACAACAATTATTGGACCCACAATACACCACTTCCCCTC
TAACTAGTACTATCATAAATGAAAAGCAAACAAATTAAGCGATAACAAATCAAAGACTCACATT
TCAACACCAAACCTTTCTACCATTTCCAATGGCCGGAGCAGTAAGCCTTTGGCGGAGAGAGGCC
GTGTTCTTGACGGCGATGCTGGCAGGCGAAACCAGCATCGTCGGACTAAGTACTCTGTTTAAGG
TAGCAACTTCAAAGGGACTCAACATTTACCCTTTCCTCAGCTATTCTTATCTTCTTGCTTCTCT
TCTCCTTCTTCCTTCTCTGTTCTTCACCAACAGGTTCAAATAACTTTAATCTTTCTATGACCAT
TCTTTTGTATAGATTTTTATTTAATTTGTATGTTTTAATACAGGTCAAGATCACTTCCTCCACT
AAGTGCCTCAATACTCTCTAAGATTGGACTTCTTGGCTTTCTAGGGTAATATCCAAATACAACA
TTCCTTCTTCCAATATTTTTTATGAAATTATCATCCACTAAACTGTTGCTAATATATGATCTTT
GGCTGAAAAAAATTCAAAACAAAAAAAGAACAGATCAATGTATGTTATTACAGGAGGCATAGGC
ATCGAATACAGCAACCCAACCTTAGCCTCCGCCATAGGCAATATTGTTCCTGCTCTTACCTTCA
TCCTCGCTGTTATCTTCAGGTTTTATTTTAATTCATTTTCCTAAAAGTTTTGCAGATTAATGTC
TAACCATCGAGTCGACATTCTAACAAAGTTTCTGGCATAATTAGGTTATTAGGCAACTTAAATT
GGAAGTAGTTTCTTTAAATCAGTCACTTCAAATTAACTTGTCCGATGGTTTTAATTCAGTTCAA
CGCATTATGTTGCTAACCAATGCTTTTTTGCTATCAGCCGTCTTACTTAATATAGAACTTATGT
TGCTAACCAATACTTTTTGCTATCAGCCGTCTTACTTAATATAGAACTTGAACTTTTTTTTCTA
CCAGATGTACATTTTCAAATATATTTATTTGGACCATTTAAGATATACTAATAATATATCTATG
CGAGCAAAACGAACACTGTTAATTTTATCCGGGAAATTAAAGACAATAGATTCAAGAAAGCGGA
ATTTCTTAGTGGTCAAGATAAGCTCAAAGATCACTTCTAACTAGCTTGAGTAGCAAGTTCGGGT
TTGTTGTAGAGTAAACTTAAGCCTAGGGTTCTTGAGTAGAGAATTGTGGACCCTTTGGTTGGCC
TAGCTCCCTATTTATACCTTCAGGGTGTCGGTTCTTCGATATGGCATGTTTCCATCATCTTCGG
AGGAGAATATTTCCATTGTCCGATTTGTTACTTTTTGTGTAGATTCGAGTTTACCTTTCAAGAT
TTTCCTCTCTAGCTAGTACCTAGGTCGGTCTCCGAGGTAATCGAGGTCGAGCTAGTCAGGCTTA
GGCCTCCAAATCAGATTCGCTATTGGACCAAGTAGTTCAAAATACTGAATGGTTTATTCTTGTT
TAAAATCAGGTTAAGTACTGGATAGAGCTAATTAAATCACTCTCCTACAATATCCAATGCGCTA
TATAGTAATGTATAAGATCATAGTTTATATATATAACAATAACATATAGGTGATATCACGTACT
TTATAAACATTTTACCTAACATGAATAAATCTGCACGAAACTTTATTTGATTCATTAGATGTTT
TCGTAAAAAATAGTTATTTAGGAAAAGTTTCGTGACCCCAAAACTAAACGAAATCATTCATGTT
CAAATGATATGAAGTTAGCTTGTTACTACATCACTATAGCACAATCTTGTGGTCCAAATCTAAC
AAGGACGTTTGCGGTTTGCATGAATATAATAAATTCATATAAACTGGTATTTCTGTAATCATTT
CTATTGGAATAAAACGTAACACAATCAATGTCAAATTTTTAACAAAGGATGGAGAAAGTATCAT
TCAAAGAAAGGAGCAGTGTAGCCAAAGTGATGGGGACGATACTGTCACTAATAGGCGCATTTGT
GGTGATTTTCTACCACGGTCCACGTGTCTTTGTCGCATCTTCTCCACCATATCTAAACTTCCGT
CAGCTTTCTCCACCGTTGTCATCGTCAAAGTCTGATTGGCTCATCGGAGGAGCTATTCTTACCA
TACAAGGCATCTTCGTTTCTGTTTCTTTTATTCTCCAGGTACACCACTTTTTATAATAAAAATA
TAGTAGAAACTCTATAAATTAATACTCGATAAATTAATAAACACGATCAATTAATAAATTATAT
CGGTTCTAAGTCGGGTCAATAGAAAAATTAACCAAAATCGATAAGATAATAAGATAATAAATTT
TTTGAAATCTCTATGTAAAAATATGATCTTAATAATATCATAAATTAATAATCATAATATCTTA
AGCATACTTTTTAAAATAATCTACTATAATATGAATTTAGTGTTGCTTGTCTTTTTTTAAAGTT
TGAATCTTGTTGAACTTCATCTCTAATTTTCTTTTTATTGCATCAAAAACTCCTAGTGTTGTAT
TTTCGATATGCATCTAAAAGTTGTGAAGAGTTCTAAACGCAATAATTGTTTTCTTACGTGTCAC
TATTTCTAAAAGTTTCACATTATCGTCTTCAACTTCTTCATCAACATTATAGACAGAAATCACA
ATTTCTTCTAAATATTCTAAATTTTTTAGTGTGCTTTATTTTCACCGGAATAGTCGAGTAAGCA
ATTGACATTTATTCTATCCAAAAAATATAGTGTTATATTTTGCTTAAATATTTCTTTAAATTAA
TAAATATTAATTTATCTTATAAAATAATATCTATTAAATAAATTAATAAAATTTTATAGTCCCA
ACATTATTAATTTATAGAGTTTATACTCTAGTTTCTAAACATGTATGAATGCATAGCAAACTAG
ACTGCTTGGAGAAAGCTACACAAATTGACGTGGTTTATATCTTCATTTATTAAACATCATTTAA
TTTAATTTTAATGTTTATTGGATAGACACATATAATGAGAGAATATCCTGAAGCATTCACAGTC
TCCATTCTCTACATTCTATGTATTTCAATCGTGACCTCAATGATTGGACTAGTAGTCGAAAAGA
ACAACCCAAGCATTTGGATCATTCATTTCGATATTACATTGTTTACAATTGTTACTACGGTATG
TTATATATATGTTAAAGAAAATTATCAAAATATTTTCTTTTTGATCTTAACATTAATTTTATTT
TATATGTGTAAACTATTTCAGGGAATAATAACTTCAGTATACTATGTGATTCATTCATGGGCAA
TACGTCACAAAAGACCTCTATACTTAGCGATATTTAAGCCTCTGTCTATTTTGATAGCAGTGGT
TATGGGGACCATTTTTCTCAACGATTCTCTCTATCTCGGATG
						
					

			
		

Sequences
Splice junction sequence	ACAAAAGACCTCTATACTTAGCGATATTTAAGCCTCTGTCTATTTTGATAGCAGTGGTTATGGG GACCATTTTTCTCAACGATTCTCTCTATCTCGGATGtttgatcggaggaattttgataacatta ggcttttacgctgtgatgtggggcaaagcaaacgaagagaaggatcagttatcattttcagaaa aagagaaa
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TTTGATCGGAGGAATTTTGATAACATTAGGCTTTTACGCTGTGATGTGGGGCAAAGCAAACGAA GAGAAGGATCAGTTATCATTTTCAGAAAAAGAGAAAACGCCTCTTCTATTAAACCGCAAAAACG ACCAAGTTTAAAAAGAAAAAGAATATAGACAATAAAACTACTAATAGTTAACAAATACTGTTAT TAATACCATATTTATAAAATTGTCTTATGTCTCTATGAACCTAGGAGTTGGAAAAAAATGTGTG TATTTAGATTTTTTTTTCAAAATACTCCAACATTTATAAATACGAGTTAACATTTTTCCTTGAC TCCTTTGGAACATATGAAAAGCTTAAATTGATATTCTTTGAAGCAATGATAGGTAACTGCACCA AGTATATATCCCGGTATAGTCACACATCCCAAGTTTAGTGAACTACACGAATTATGTGTATTGT ATGCTAATGTATACCAATTAGTAACATATGATCAACACCATCATATTCCTTTTACACCGTTTGT CAAATCCATTTTTAAAACCACTTTTGGTGAATTACGCCGTAGAAAAACAAGTCTAACACATTGT AACATTTTGAAGTGGTAATAAAATTTCTGATTCAAGGTTTCAATATCTATAATTATTGAAGTGG TTTCAATATCCATTATTGGATGATCATATTTTGGCACAACTGTTTTCAAGTCTGCGCAAAGAAT AGGGAATCTTATAATAAATTCAAGAAACAACAATTATTGGACCCACAATACACCACTTCCCCTC TAACTAGTACTATCATAAATGAAAAGCAAACAAATTAAGCGATAACAAATCAAAGACTCACATT TCAACACCAAACCTTTCTACCATTTCCAATGGCCGGAGCAGTAAGCCTTTGGCGGAGAGAGGCC GTGTTCTTGACGGCGATGCTGGCAGGCGAAACCAGCATCGTCGGACTAAGTACTCTGTTTAAGG TAGCAACTTCAAAGGGACTCAACATTTACCCTTTCCTCAGCTATTCTTATCTTCTTGCTTCTCT TCTCCTTCTTCCTTCTCTGTTCTTCACCAACAGGTTCAAATAACTTTAATCTTTCTATGACCAT TCTTTTGTATAGATTTTTATTTAATTTGTATGTTTTAATACAGGTCAAGATCACTTCCTCCACT AAGTGCCTCAATACTCTCTAAGATTGGACTTCTTGGCTTTCTAGGGTAATATCCAAATACAACA TTCCTTCTTCCAATATTTTTTATGAAATTATCATCCACTAAACTGTTGCTAATATATGATCTTT GGCTGAAAAAAATTCAAAACAAAAAAAGAACAGATCAATGTATGTTATTACAGGAGGCATAGGC ATCGAATACAGCAACCCAACCTTAGCCTCCGCCATAGGCAATATTGTTCCTGCTCTTACCTTCA TCCTCGCTGTTATCTTCAGGTTTTATTTTAATTCATTTTCCTAAAAGTTTTGCAGATTAATGTC TAACCATCGAGTCGACATTCTAACAAAGTTTCTGGCATAATTAGGTTATTAGGCAACTTAAATT GGAAGTAGTTTCTTTAAATCAGTCACTTCAAATTAACTTGTCCGATGGTTTTAATTCAGTTCAA CGCATTATGTTGCTAACCAATGCTTTTTTGCTATCAGCCGTCTTACTTAATATAGAACTTATGT TGCTAACCAATACTTTTTGCTATCAGCCGTCTTACTTAATATAGAACTTGAACTTTTTTTTCTA CCAGATGTACATTTTCAAATATATTTATTTGGACCATTTAAGATATACTAATAATATATCTATG CGAGCAAAACGAACACTGTTAATTTTATCCGGGAAATTAAAGACAATAGATTCAAGAAAGCGGA ATTTCTTAGTGGTCAAGATAAGCTCAAAGATCACTTCTAACTAGCTTGAGTAGCAAGTTCGGGT TTGTTGTAGAGTAAACTTAAGCCTAGGGTTCTTGAGTAGAGAATTGTGGACCCTTTGGTTGGCC TAGCTCCCTATTTATACCTTCAGGGTGTCGGTTCTTCGATATGGCATGTTTCCATCATCTTCGG AGGAGAATATTTCCATTGTCCGATTTGTTACTTTTTGTGTAGATTCGAGTTTACCTTTCAAGAT TTTCCTCTCTAGCTAGTACCTAGGTCGGTCTCCGAGGTAATCGAGGTCGAGCTAGTCAGGCTTA GGCCTCCAAATCAGATTCGCTATTGGACCAAGTAGTTCAAAATACTGAATGGTTTATTCTTGTT TAAAATCAGGTTAAGTACTGGATAGAGCTAATTAAATCACTCTCCTACAATATCCAATGCGCTA TATAGTAATGTATAAGATCATAGTTTATATATATAACAATAACATATAGGTGATATCACGTACT TTATAAACATTTTACCTAACATGAATAAATCTGCACGAAACTTTATTTGATTCATTAGATGTTT TCGTAAAAAATAGTTATTTAGGAAAAGTTTCGTGACCCCAAAACTAAACGAAATCATTCATGTT CAAATGATATGAAGTTAGCTTGTTACTACATCACTATAGCACAATCTTGTGGTCCAAATCTAAC AAGGACGTTTGCGGTTTGCATGAATATAATAAATTCATATAAACTGGTATTTCTGTAATCATTT CTATTGGAATAAAACGTAACACAATCAATGTCAAATTTTTAACAAAGGATGGAGAAAGTATCAT TCAAAGAAAGGAGCAGTGTAGCCAAAGTGATGGGGACGATACTGTCACTAATAGGCGCATTTGT GGTGATTTTCTACCACGGTCCACGTGTCTTTGTCGCATCTTCTCCACCATATCTAAACTTCCGT CAGCTTTCTCCACCGTTGTCATCGTCAAAGTCTGATTGGCTCATCGGAGGAGCTATTCTTACCA TACAAGGCATCTTCGTTTCTGTTTCTTTTATTCTCCAGGTACACCACTTTTTATAATAAAAATA TAGTAGAAACTCTATAAATTAATACTCGATAAATTAATAAACACGATCAATTAATAAATTATAT CGGTTCTAAGTCGGGTCAATAGAAAAATTAACCAAAATCGATAAGATAATAAGATAATAAATTT TTTGAAATCTCTATGTAAAAATATGATCTTAATAATATCATAAATTAATAATCATAATATCTTA AGCATACTTTTTAAAATAATCTACTATAATATGAATTTAGTGTTGCTTGTCTTTTTTTAAAGTT TGAATCTTGTTGAACTTCATCTCTAATTTTCTTTTTATTGCATCAAAAACTCCTAGTGTTGTAT TTTCGATATGCATCTAAAAGTTGTGAAGAGTTCTAAACGCAATAATTGTTTTCTTACGTGTCAC TATTTCTAAAAGTTTCACATTATCGTCTTCAACTTCTTCATCAACATTATAGACAGAAATCACA ATTTCTTCTAAATATTCTAAATTTTTTAGTGTGCTTTATTTTCACCGGAATAGTCGAGTAAGCA ATTGACATTTATTCTATCCAAAAAATATAGTGTTATATTTTGCTTAAATATTTCTTTAAATTAA TAAATATTAATTTATCTTATAAAATAATATCTATTAAATAAATTAATAAAATTTTATAGTCCCA ACATTATTAATTTATAGAGTTTATACTCTAGTTTCTAAACATGTATGAATGCATAGCAAACTAG ACTGCTTGGAGAAAGCTACACAAATTGACGTGGTTTATATCTTCATTTATTAAACATCATTTAA TTTAATTTTAATGTTTATTGGATAGACACATATAATGAGAGAATATCCTGAAGCATTCACAGTC TCCATTCTCTACATTCTATGTATTTCAATCGTGACCTCAATGATTGGACTAGTAGTCGAAAAGA ACAACCCAAGCATTTGGATCATTCATTTCGATATTACATTGTTTACAATTGTTACTACGGTATG TTATATATATGTTAAAGAAAATTATCAAAATATTTTCTTTTTGATCTTAACATTAATTTTATTT TATATGTGTAAACTATTTCAGGGAATAATAACTTCAGTATACTATGTGATTCATTCATGGGCAA TACGTCACAAAAGACCTCTATACTTAGCGATATTTAAGCCTCTGTCTATTTTGATAGCAGTGGT TATGGGGACCATTTTTCTCAACGATTCTCTCTATCTCGGATG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.481204813

Conservation Information
Conserved circRNAs	NA
PMCS	0.481204813

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							ath-miR5021 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	ath-miR5021
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of 3_circ_ag.8

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