Detail information of 3_circ_ag.10


General Information
CircRNA Name 3_circ_ag.10
ID in PlantcircBase ath_circ_024173
Alias NA
Organism Arabidpsis thaliana
Position chr3: 10451838-10456347  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT3G28070_circ_g.1 3_circ_ag.2 3_circ_ag.3 3_circ_ag.4 3_circ_ag.5 3_circ_ag.6 AT3G28070_circ_g.7 3_circ_ag.8 3_circ_ag.9 AT3G28080_circ_g.1 3_circ_ag.2 AT3G28100_circ_g.1
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGTAGCAACTTCAAAGGGACTCAATCTTTACGCTTTCCTCGGCTATTCTTATCTTCTTGCTTC
TCTCCTTCTTCTTCCTTCTCTGTTCTTCACCGACAGgtcaagatcacttcctccactaagtgcc
tcaatactctctaagattggacttcttggctttctagggtaatatccaaatacaacattccttc
ttccaata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCAAGATCACTTCCTCCACTAAGTGCCTCAATACTCTCTAAGATTGGACTTCTTGGCTTTCTA
GGGTAATATCCAAATACAACATTCCTTCTTCCAATATTTTTTATGAAATTATCATCCACTAAAC
TGTTGCTAATATATGATCTTTGGCTGAAAAAAATTCAAAACAAAAAAAGAACAGATCAATGTAT
GTTATTACAGGAGGCATAGGCATCGAATACAGCAACCCAACCTTAGCCTCCGCCATAGGCAATA
TTGTTCCTGCTCTTACCTTCATCCTCGCTGTTATCTTCAGGTTTTATTTTAATTCATTTTCCTA
AAAGTTTTGCAGATTAATGTCTAACCATCGAGTCGACATTCTAACAAAGTTTCTGGCATAATTA
GGTTATTAGGCAACTTAAATTGGAAGTAGTTTCTTTAAATCAGTCACTTCAAATTAACTTGTCC
GATGGTTTTAATTCAGTTCAACGCATTATGTTGCTAACCAATGCTTTTTTGCTATCAGCCGTCT
TACTTAATATAGAACTTATGTTGCTAACCAATACTTTTTGCTATCAGCCGTCTTACTTAATATA
GAACTTGAACTTTTTTTTCTACCAGATGTACATTTTCAAATATATTTATTTGGACCATTTAAGA
TATACTAATAATATATCTATGCGAGCAAAACGAACACTGTTAATTTTATCCGGGAAATTAAAGA
CAATAGATTCAAGAAAGCGGAATTTCTTAGTGGTCAAGATAAGCTCAAAGATCACTTCTAACTA
GCTTGAGTAGCAAGTTCGGGTTTGTTGTAGAGTAAACTTAAGCCTAGGGTTCTTGAGTAGAGAA
TTGTGGACCCTTTGGTTGGCCTAGCTCCCTATTTATACCTTCAGGGTGTCGGTTCTTCGATATG
GCATGTTTCCATCATCTTCGGAGGAGAATATTTCCATTGTCCGATTTGTTACTTTTTGTGTAGA
TTCGAGTTTACCTTTCAAGATTTTCCTCTCTAGCTAGTACCTAGGTCGGTCTCCGAGGTAATCG
AGGTCGAGCTAGTCAGGCTTAGGCCTCCAAATCAGATTCGCTATTGGACCAAGTAGTTCAAAAT
ACTGAATGGTTTATTCTTGTTTAAAATCAGGTTAAGTACTGGATAGAGCTAATTAAATCACTCT
CCTACAATATCCAATGCGCTATATAGTAATGTATAAGATCATAGTTTATATATATAACAATAAC
ATATAGGTGATATCACGTACTTTATAAACATTTTACCTAACATGAATAAATCTGCACGAAACTT
TATTTGATTCATTAGATGTTTTCGTAAAAAATAGTTATTTAGGAAAAGTTTCGTGACCCCAAAA
CTAAACGAAATCATTCATGTTCAAATGATATGAAGTTAGCTTGTTACTACATCACTATAGCACA
ATCTTGTGGTCCAAATCTAACAAGGACGTTTGCGGTTTGCATGAATATAATAAATTCATATAAA
CTGGTATTTCTGTAATCATTTCTATTGGAATAAAACGTAACACAATCAATGTCAAATTTTTAAC
AAAGGATGGAGAAAGTATCATTCAAAGAAAGGAGCAGTGTAGCCAAAGTGATGGGGACGATACT
GTCACTAATAGGCGCATTTGTGGTGATTTTCTACCACGGTCCACGTGTCTTTGTCGCATCTTCT
CCACCATATCTAAACTTCCGTCAGCTTTCTCCACCGTTGTCATCGTCAAAGTCTGATTGGCTCA
TCGGAGGAGCTATTCTTACCATACAAGGCATCTTCGTTTCTGTTTCTTTTATTCTCCAGGTACA
CCACTTTTTATAATAAAAATATAGTAGAAACTCTATAAATTAATACTCGATAAATTAATAAACA
CGATCAATTAATAAATTATATCGGTTCTAAGTCGGGTCAATAGAAAAATTAACCAAAATCGATA
AGATAATAAGATAATAAATTTTTTGAAATCTCTATGTAAAAATATGATCTTAATAATATCATAA
ATTAATAATCATAATATCTTAAGCATACTTTTTAAAATAATCTACTATAATATGAATTTAGTGT
TGCTTGTCTTTTTTTAAAGTTTGAATCTTGTTGAACTTCATCTCTAATTTTCTTTTTATTGCAT
CAAAAACTCCTAGTGTTGTATTTTCGATATGCATCTAAAAGTTGTGAAGAGTTCTAAACGCAAT
AATTGTTTTCTTACGTGTCACTATTTCTAAAAGTTTCACATTATCGTCTTCAACTTCTTCATCA
ACATTATAGACAGAAATCACAATTTCTTCTAAATATTCTAAATTTTTTAGTGTGCTTTATTTTC
ACCGGAATAGTCGAGTAAGCAATTGACATTTATTCTATCCAAAAAATATAGTGTTATATTTTGC
TTAAATATTTCTTTAAATTAATAAATATTAATTTATCTTATAAAATAATATCTATTAAATAAAT
TAATAAAATTTTATAGTCCCAACATTATTAATTTATAGAGTTTATACTCTAGTTTCTAAACATG
TATGAATGCATAGCAAACTAGACTGCTTGGAGAAAGCTACACAAATTGACGTGGTTTATATCTT
CATTTATTAAACATCATTTAATTTAATTTTAATGTTTATTGGATAGACACATATAATGAGAGAA
TATCCTGAAGCATTCACAGTCTCCATTCTCTACATTCTATGTATTTCAATCGTGACCTCAATGA
TTGGACTAGTAGTCGAAAAGAACAACCCAAGCATTTGGATCATTCATTTCGATATTACATTGTT
TACAATTGTTACTACGGTATGTTATATATATGTTAAAGAAAATTATCAAAATATTTTCTTTTTG
ATCTTAACATTAATTTTATTTTATATGTGTAAACTATTTCAGGGAATAATAACTTCAGTATACT
ATGTGATTCATTCATGGGCAATACGTCACAAAAGACCTCTATACTTAGCGATATTTAAGCCTCT
GTCTATTTTGATAGCAGTGGTTATGGGGACCATTTTTCTCAACGATTCTCTCTATCTCGGATGG
TATACTAATCAATAGTCTTCATACACATATCTATAAAGAAAAAAACCATTATGTTCATTTTTGA
TTTTGTCCTTCATTTTGCAGTTTGATTGGAGGAATTTTGATAACATTAGGCTTTTATGTTGTGA
TGTGGGGCAAAGCAAACGAAGAGAAGAACAAGTTGTTATCATTTTCAGGAAAAGAGAAAACCCC
TCTTCTATTGAGCGGCAAAAACGACCAAATTTAAATGAAAAAAAATTTATAATCAAAGGAGTTA
CAAACTCTGAAATAGTCTCTTATATACATAGCGTGCAAACTATTAGTGTATACTGTGTATTGCT
TTGTATATAACTTAGAAAATGACTATCTAATTGTTTTTTAAGTTACGGGTACGTAACGACTATC
TAAATTCGTTAGATCACGACATCTAACGAATTTTGGTCGATTTTAAGTAGTATCGATTTAAAGA
TTTGTAAGTTAATTAAGCAGCCAAATAGAGGCATTGGAAAACAAATGAAAATATTTCTGATAGT
AACACTGGAGAGGTAGGACGAGGTAGGATCAATACATGGTCAACCATTTGCTTAAGAAATGACT
ACAAAAGAAAATATATATTTTTACAAGAGAGATTAAATGGTTTGTTAACATGATCATGTGAGTT
TGGTGAACGGTTTTATAGAAACAGAAACACTTTCTTTAAAATTCTTGCATTATCGGTTTTTACT
ATCACTATATTGTAAGTTTTGCAACAATAATGATCTTTAAGAAAGAAAAATTGTACTGATACTT
TTAATTTTTTTTTAAGTTTCTTTGAACCTAGCATGTATAGAGTGGTTGGGAAAAGGAAACAAAG
GTGTAGCTTTTTGATTTCTTTTGTTCCTTGTACTACAAAATTCATACATAAATTCTCAAATTCT
AGAGAGAGATTAAATACTGAGTTAACACTTTTCCTCAACTCCAACATATGGAAACTTAAATTGA
TGTTTTAGGTTCGATTAGTAACACAAAATATTATGTATTTTACCAAAAAAAATAAATGATAAAG
AATACCATATTAATTAAAAATGATATAAAATAACGATAAAATATCAATATTAAAATGAAAATAC
AGTCTTATGTCCTTTTTAGTGCCGTTTTATGATTGGTAAAAACGATAAATCTTATTCATTTTTC
ACCAAAAGAATAAAGAATATTATAAAGTCAACAAACGATAATTATTGGACCTACATAATGCTAT
TCTTTATATTTGTAACATCAAGAAAAGCAACAAAAAGATAATGAATTAAAGAATCACATTTCAT
ACAACCTTTCTATCATTTTCCAATAATGGCCCGGACAGTAAGTCTCTGGCGGAGAGAGGCCGTG
TTCTTGACGGCCATGCTGGCGACAGAAACCGGCGTAGTCGGAATAAGTACTTTGTTTAAAGTAG
CAACTTCAAAGGGACTCAATCTTTACGCTTTCCTCGGCTATTCTTATCTTCTTGCTTCTCTCCT
TCTTCTTCCTTCTCTGTTCTTCACCGACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.688626722
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017