Plant Circular RNA Database

Detail information of Os08g0307400_circ_g.4

			
						 General Information
					
						CircRNA Name
						Os08g0307400_circ_g.4
					
						ID in PlantcircBase
						osa_circ_036652
					
						Alias
						Os_ciR903
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr8: 12856578-12862994  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os08g0307400						
					
						Parent gene annotation
						
							Similar to Phosphatidylinositol 3-kinase 1. (Os08t0307400-01);Si
milar to Phosphatidylinositol 3-kinase, root isoform (EC 2.7.1.1
37) (PI3- kinase) (PtdIns-3-kinase) (PI3K) (SPI3K-5). (Os08t0307
400-02);Similar to Phosphatidylinositol 3-kinase 1. (Os08t030740
0-03)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os08g0307400_circ_g.1 Os08g0307400_circ_g.2 Os08g0307400_circ_g.3 Os08g0307400_circ_g.5 Os08g0307400_circ_g.6 Os08g0307400_circ_g.7 Os08g0307400_circ_g.8 Os08g0307400_circ_g.9 						
					
						Support reads
						19/3
					
						Tissues
						root/shoot, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os08t0307400-01:7
Os08t0307400-02:7
Os08t0307400-03:7

General Information
CircRNA Name	Os08g0307400_circ_g.4
ID in PlantcircBase	osa_circ_036652
Alias	Os_ciR903
Organism	Oryza sativa
Position	chr8: 12856578-12862994 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os08g0307400
Parent gene annotation	Similar to Phosphatidylinositol 3-kinase 1. (Os08t0307400-01);Si milar to Phosphatidylinositol 3-kinase, root isoform (EC 2.7.1.1 37) (PI3- kinase) (PtdIns-3-kinase) (PI3K) (SPI3K-5). (Os08t0307 400-02);Similar to Phosphatidylinositol 3-kinase 1. (Os08t030740 0-03)
Parent gene strand	-
Alternative splicing	Os08g0307400_circ_g.1 Os08g0307400_circ_g.2 Os08g0307400_circ_g.3 Os08g0307400_circ_g.5 Os08g0307400_circ_g.6 Os08g0307400_circ_g.7 Os08g0307400_circ_g.8 Os08g0307400_circ_g.9
Support reads	19/3
Tissues	root/shoot, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os08t0307400-01:7 Os08t0307400-02:7 Os08t0307400-03:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CAGATCTTTCAAACCGCAGGCCTTGTACAAGTTGCAGCAAATAGCATTGCAGTTCTTCGTCGCT
GGCCCTTTCAAACACGCCGACAGCATAAGCACGAACctttcagtaccacccatggcctcaacca
tttctttgcataatttcatcggtggtgatggtggtgcaaatcgatgtggttgttccccaagcat
atacgaga

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1057
Transcript exons: 12856578-12856730,12858088-12858242,12860561-12860698,12
860787-12860957,12861120-12861301,12861411-12861532,1286
2859-12862994
CTTTCAGTACCACCCATGGCCTCAACCATTTCTTTGCATAATTTCATCGGTGGTGATGGTGGTG
CAAATCGATGTGGTTGTTCCCCAAGCATATACGAGAAGTCAACATGGAAAAGTCTTCCATCGTC
TTGTAGGAGAAGGTTGTCAAGATGCCTGTCTCCAATCCCCAGTATGTATGTAATGACACTGTAG
CCAGCACAACTTTTTATAAAAGTTTCCAAACATTGGGCAGTTATACCAAAAGGGCCATCTTCAT
CCGGATTACACTTTTGTAGGTAACTTTCTATACTGCCCGTTTTTTGTATAATCTTTGCAACAGA
AATTGAAGGAATAAACTCAACCAACCCTTCTTCTAGACCAGTCGCAAGAACTTGATAAGGAGTA
AGGTGTAAGTCTAGATTATCTGACTTGAGCAACCGATCCATCAAAGAGATTATTTGAATAACCA
ACTGATCCTTGCGGAGATTATCTCCCTTCTTGAAAATCATTTTCGATGTACCCCCATTCACAGT
ACTAAATGCTATACACAATGGATAATTAGCACTTTTGAATACCAATGACTCTTCAGGCACAATT
CCGTCAAGGAGGACAGTCGGTGTTAATGGAGATGGAATTGGCTCACTGAAGTTTTTAAGCTCAC
TGAAAATTCCGGAGAATAACTGTTCTAATATCCTGCCTTTAGTTTGTGCGTCATGTTTGACATT
TGATAGTTCCTTCATTATAGAACGTAACTGAGCAGTGAGTTCTGCCTGCTCTATCAAACTCTGC
CACACTTGAAATCCATTTTCCTCCTTATGTATCTCATTATAGCATCTTCAAGCATCTCATATGT
ACATAGATACCTTCTTGCATGAGAAGGATCATGAAGCTCAACAACTAAATACCAGCGAAGAAAG
CTAGCAAGTTCGTAATTTGACAAAGCCCGATTCACAAGGAAGTGTGCTAGACGAGATCTGTCAG
ATCTTTCAAACCGCAGGCCTTGTACAAGTTGCAGCAAATAGCATTGCAGTTCTTCGTCGCTGGC
CCTTTCAAACACGCCGACAGCATAAGCACGAAC
Transcript length: 1061
Transcript exons: 12856578-12856730,12858088-12858242,12860561-12860698,12
860787-12860957,12861120-12861305,12861411-12861532,1286
2859-12862994
CTTTCAGTACCACCCATGGCCTCAACCATTTCTTTGCATAATTTCATCGGTGGTGATGGTGGTG
CAAATCGATGTGGTTGTTCCCCAAGCATATACGAGAAGTCAACATGGAAAAGTCTTCCATCGTC
TTGTAGGAGAAGGTTGTCAAGATGCCTGTCTCCAATCCCCAGTATGTATGTAATGACACTGTAG
CCAGCACAACTTTTTATAAAAGTTTCCAAACATTGGGCAGTTATACCAAAAGGGCCATCTTCAT
CCGGATTACACTTTTGTAGGTAACTTTCTATACTGCCCGTTTTTTGTATAATCTTTGCAACAGA
AATTGAAGGAATAAACTCAACCAACCCTTCTTCTAGACCAGTCGCAAGAACTTGATAAGGAGTA
AGGTGTAAGTCTAGATTATCTGACTTGAGCAACCGATCCATCAAAGAGATTATTTGAATAACCA
ACTGATCCTTGCGGAGATTATCTCCCTTCTTGAAAATCATTTTCGATGTACCCCCATTCACAGT
ACTAAATGCTATACACAATGGATAATTAGCACTTTTGAATACCAATGACTCTTCAGGCACAATT
CCGTCAAGGAGGACAGTCGGTGTTAATGGAGATGGAATTGGCTCACTGAAGTTTTTAAGCTCAC
TGAAAATTCCGGAGAATAACTGTTCTAATATCCTGCCTTTAGTTTGTGCGTCATGTTTGACATT
TGATAGTTCCTTCATTATAGAACGTAACTGAGCAGTGAGTTCTGCCTGCTCTATCAAACTCTGC
CACACTTGAAATCCATTTTCCTCCTTATGTACTGATCTCATTATAGCATCTTCAAGCATCTCAT
ATGTACATAGATACCTTCTTGCATGAGAAGGATCATGAAGCTCAACAACTAAATACCAGCGAAG
AAAGCTAGCAAGTTCGTAATTTGACAAAGCCCGATTCACAAGGAAGTGTGCTAGACGAGATCTG
TCAGATCTTTCAAACCGCAGGCCTTGTACAAGTTGCAGCAAATAGCATTGCAGTTCTTCGTCGC
TGGCCCTTTCAAACACGCCGACAGCATAAGCACGAAC
Transcript length: 193
Transcript exons: 12856578-12856703,12862928-12862994
CTTTCAGTACCACCCATGGCCTCAACCATTTCTTTGCATAATTTCATCGGTGGTGATGGTGGTG
CAAATCGATGTGGTTGTTCCCCAAGCATATACGAGAAGTCAACATGGAAAAGTCTTCCATCGGC
AGCAAATAGCATTGCAGTTCTTCGTCGCTGGCCCTTTCAAACACGCCGACAGCATAAGCACGAA
C
Transcript length: 230
Transcript exons: 12856578-12856676,12862864-12862994
CTTTCAGTACCACCCATGGCCTCAACCATTTCTTTGCATAATTTCATCGGTGGTGATGGTGGTG
CAAATCGATGTGGTTGTTCCCCAAGCATATACGAGTTCACAAGGAAGTGTGCTAGACGAGATCT
GTCAGATCTTTCAAACCGCAGGCCTTGTACAAGTTGCAGCAAATAGCATTGCAGTTCTTCGTCG
CTGGCCCTTTCAAACACGCCGACAGCATAAGCACGAAC
Transcript length: 254
Transcript exons: 12856578-12856697,12862861-12862994
CTTTCAGTACCACCCATGGCCTCAACCATTTCTTTGCATAATTTCATCGGTGGTGATGGTGGTG
CAAATCGATGTGGTTGTTCCCCAAGCATATACGAGAAGTCAACATGGAAAAGTCTTCGATTCAC
AAGGAAGTGTGCTAGACGAGATCTGTCAGATCTTTCAAACCGCAGGCCTTGTACAAGTTGCAGC
AAATAGCATTGCAGTTCTTCGTCGCTGGCCCTTTCAAACACGCCGACAGCATAAGCACGAAC
Transcript length: 329
Transcript exons: 12856578-12856660,12858087-12858119,12858133-12858233,12
862883-12862994
CTTTCAGTACCACCCATGGCCTCAACCATTTCTTTGCATAATTTCATCGGTGGTGATGGTGGTG
CAAATCGATGTGGTTGTTCCCTGTCTCCAATCCCCAGTATGTATGTAATGACCAACTTTTTATA
AAAGTTTCCAAACATTGGGCAGTTATACCAAAAGGGCCATCTTCATCCGGATTACACTTTTGTA
GGTAACTTTCTATACTGCCCGTTTTGACGAGATCTGTCAGATCTTTCAAACCGCAGGCCTTGTA
CAAGTTGCAGCAAATAGCATTGCAGTTCTTCGTCGCTGGCCCTTTCAAACACGCCGACAGCATA
AGCACGAAC
						
					

						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.						
					

			
		

Sequences
Splice junction sequence	CAGATCTTTCAAACCGCAGGCCTTGTACAAGTTGCAGCAAATAGCATTGCAGTTCTTCGTCGCT GGCCCTTTCAAACACGCCGACAGCATAAGCACGAACctttcagtaccacccatggcctcaacca tttctttgcataatttcatcggtggtgatggtggtgcaaatcgatgtggttgttccccaagcat atacgaga
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1057 Transcript exons: 12856578-12856730,12858088-12858242,12860561-12860698,12 860787-12860957,12861120-12861301,12861411-12861532,1286 2859-12862994 CTTTCAGTACCACCCATGGCCTCAACCATTTCTTTGCATAATTTCATCGGTGGTGATGGTGGTG CAAATCGATGTGGTTGTTCCCCAAGCATATACGAGAAGTCAACATGGAAAAGTCTTCCATCGTC TTGTAGGAGAAGGTTGTCAAGATGCCTGTCTCCAATCCCCAGTATGTATGTAATGACACTGTAG CCAGCACAACTTTTTATAAAAGTTTCCAAACATTGGGCAGTTATACCAAAAGGGCCATCTTCAT CCGGATTACACTTTTGTAGGTAACTTTCTATACTGCCCGTTTTTTGTATAATCTTTGCAACAGA AATTGAAGGAATAAACTCAACCAACCCTTCTTCTAGACCAGTCGCAAGAACTTGATAAGGAGTA AGGTGTAAGTCTAGATTATCTGACTTGAGCAACCGATCCATCAAAGAGATTATTTGAATAACCA ACTGATCCTTGCGGAGATTATCTCCCTTCTTGAAAATCATTTTCGATGTACCCCCATTCACAGT ACTAAATGCTATACACAATGGATAATTAGCACTTTTGAATACCAATGACTCTTCAGGCACAATT CCGTCAAGGAGGACAGTCGGTGTTAATGGAGATGGAATTGGCTCACTGAAGTTTTTAAGCTCAC TGAAAATTCCGGAGAATAACTGTTCTAATATCCTGCCTTTAGTTTGTGCGTCATGTTTGACATT TGATAGTTCCTTCATTATAGAACGTAACTGAGCAGTGAGTTCTGCCTGCTCTATCAAACTCTGC CACACTTGAAATCCATTTTCCTCCTTATGTATCTCATTATAGCATCTTCAAGCATCTCATATGT ACATAGATACCTTCTTGCATGAGAAGGATCATGAAGCTCAACAACTAAATACCAGCGAAGAAAG CTAGCAAGTTCGTAATTTGACAAAGCCCGATTCACAAGGAAGTGTGCTAGACGAGATCTGTCAG ATCTTTCAAACCGCAGGCCTTGTACAAGTTGCAGCAAATAGCATTGCAGTTCTTCGTCGCTGGC CCTTTCAAACACGCCGACAGCATAAGCACGAAC Transcript length: 1061 Transcript exons: 12856578-12856730,12858088-12858242,12860561-12860698,12 860787-12860957,12861120-12861305,12861411-12861532,1286 2859-12862994 CTTTCAGTACCACCCATGGCCTCAACCATTTCTTTGCATAATTTCATCGGTGGTGATGGTGGTG CAAATCGATGTGGTTGTTCCCCAAGCATATACGAGAAGTCAACATGGAAAAGTCTTCCATCGTC TTGTAGGAGAAGGTTGTCAAGATGCCTGTCTCCAATCCCCAGTATGTATGTAATGACACTGTAG CCAGCACAACTTTTTATAAAAGTTTCCAAACATTGGGCAGTTATACCAAAAGGGCCATCTTCAT CCGGATTACACTTTTGTAGGTAACTTTCTATACTGCCCGTTTTTTGTATAATCTTTGCAACAGA AATTGAAGGAATAAACTCAACCAACCCTTCTTCTAGACCAGTCGCAAGAACTTGATAAGGAGTA AGGTGTAAGTCTAGATTATCTGACTTGAGCAACCGATCCATCAAAGAGATTATTTGAATAACCA ACTGATCCTTGCGGAGATTATCTCCCTTCTTGAAAATCATTTTCGATGTACCCCCATTCACAGT ACTAAATGCTATACACAATGGATAATTAGCACTTTTGAATACCAATGACTCTTCAGGCACAATT CCGTCAAGGAGGACAGTCGGTGTTAATGGAGATGGAATTGGCTCACTGAAGTTTTTAAGCTCAC TGAAAATTCCGGAGAATAACTGTTCTAATATCCTGCCTTTAGTTTGTGCGTCATGTTTGACATT TGATAGTTCCTTCATTATAGAACGTAACTGAGCAGTGAGTTCTGCCTGCTCTATCAAACTCTGC CACACTTGAAATCCATTTTCCTCCTTATGTACTGATCTCATTATAGCATCTTCAAGCATCTCAT ATGTACATAGATACCTTCTTGCATGAGAAGGATCATGAAGCTCAACAACTAAATACCAGCGAAG AAAGCTAGCAAGTTCGTAATTTGACAAAGCCCGATTCACAAGGAAGTGTGCTAGACGAGATCTG TCAGATCTTTCAAACCGCAGGCCTTGTACAAGTTGCAGCAAATAGCATTGCAGTTCTTCGTCGC TGGCCCTTTCAAACACGCCGACAGCATAAGCACGAAC Transcript length: 193 Transcript exons: 12856578-12856703,12862928-12862994 CTTTCAGTACCACCCATGGCCTCAACCATTTCTTTGCATAATTTCATCGGTGGTGATGGTGGTG CAAATCGATGTGGTTGTTCCCCAAGCATATACGAGAAGTCAACATGGAAAAGTCTTCCATCGGC AGCAAATAGCATTGCAGTTCTTCGTCGCTGGCCCTTTCAAACACGCCGACAGCATAAGCACGAA C Transcript length: 230 Transcript exons: 12856578-12856676,12862864-12862994 CTTTCAGTACCACCCATGGCCTCAACCATTTCTTTGCATAATTTCATCGGTGGTGATGGTGGTG CAAATCGATGTGGTTGTTCCCCAAGCATATACGAGTTCACAAGGAAGTGTGCTAGACGAGATCT GTCAGATCTTTCAAACCGCAGGCCTTGTACAAGTTGCAGCAAATAGCATTGCAGTTCTTCGTCG CTGGCCCTTTCAAACACGCCGACAGCATAAGCACGAAC Transcript length: 254 Transcript exons: 12856578-12856697,12862861-12862994 CTTTCAGTACCACCCATGGCCTCAACCATTTCTTTGCATAATTTCATCGGTGGTGATGGTGGTG CAAATCGATGTGGTTGTTCCCCAAGCATATACGAGAAGTCAACATGGAAAAGTCTTCGATTCAC AAGGAAGTGTGCTAGACGAGATCTGTCAGATCTTTCAAACCGCAGGCCTTGTACAAGTTGCAGC AAATAGCATTGCAGTTCTTCGTCGCTGGCCCTTTCAAACACGCCGACAGCATAAGCACGAAC Transcript length: 329 Transcript exons: 12856578-12856660,12858087-12858119,12858133-12858233,12 862883-12862994 CTTTCAGTACCACCCATGGCCTCAACCATTTCTTTGCATAATTTCATCGGTGGTGATGGTGGTG CAAATCGATGTGGTTGTTCCCTGTCTCCAATCCCCAGTATGTATGTAATGACCAACTTTTTATA AAAGTTTCCAAACATTGGGCAGTTATACCAAAAGGGCCATCTTCATCCGGATTACACTTTTGTA GGTAACTTTCTATACTGCCCGTTTTGACGAGATCTGTCAGATCTTTCAAACCGCAGGCCTTGTA CAAGTTGCAGCAAATAGCATTGCAGTTCTTCGTCGCTGGCCCTTTCAAACACGCCGACAGCATA AGCACGAAC
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_007656* osi_circ_017757 						
					
						PMCS
						0.335949788

Conservation Information
Conserved circRNAs	osi_circ_007656* osi_circ_017757
PMCS	0.335949788

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							12861436-12862882(-)
						
						Potential amino acid sequence
						
							MLEDAIMRSVHKEENGFQVWQSLIEQAELTAQLRSIMKELSNVKHDAQTKGRILEQLFSGIFSE
LKNFSEPIPSPLTPTVLLDGIVPEESLVFKSANYPLCIAFSTVNGGTSKMIFKKGDNLRKDQLV
IQIISLMDRLLKSDNLDLHLTPYQVLATGLEEGLVEFIPSISVAKIIQKTGSIESYLQKCNPDE
DGPFGITAQCLETFIKSCAGYSVITYILGIGDRHLDNLLLQDDGRLFHVDFSYMLGEQPHRFAP
PSPPMKLCKEMVEAMGGTERFVLMLSACLKGPATKNCNAICCNLYKACGLKDLTDLV*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	12861436-12862882(-)
Potential amino acid sequence	MLEDAIMRSVHKEENGFQVWQSLIEQAELTAQLRSIMKELSNVKHDAQTKGRILEQLFSGIFSE LKNFSEPIPSPLTPTVLLDGIVPEESLVFKSANYPLCIAFSTVNGGTSKMIFKKGDNLRKDQLV IQIISLMDRLLKSDNLDLHLTPYQVLATGLEEGLVEFIPSISVAKIIQKTGSIESYLQKCNPDE DGPFGITAQCLETFIKSCAGYSVITYILGIGDRHLDNLLLQDDGRLFHVDFSYMLGEQPHRFAP PSPPMKLCKEMVEAMGGTERFVLMLSACLKGPATKNCNAICCNLYKACGLKDLTDLV*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os08g0307400_circ_g.4

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