Plant Circular RNA Database

Detail information of AT5G14060_circ_g.14

			
						 General Information
					
						CircRNA Name
						AT5G14060_circ_g.14
					
						ID in PlantcircBase
						ath_circ_038182
					
						Alias
						At_ciR5032
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 4537608-4538262  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							AT5G14060						
					
						Parent gene annotation
						
							Aspartokinase
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT5G14060_circ_g.2 AT5G14060_circ_g.3 AT5G14060_circ_g.4 AT5G14060_circ_g.5 AT5G14060_circ_g.6 AT5G14060_circ_g.7 AT5G14060_circ_g.8 AT5G14060_circ_g.9 AT5G14060_circ_g.10 AT5G14060_circ_g.11 AT5G14060_circ_g.12 AT5G14060_circ_g.13 AT5G14060_circ_g.15 AT5G14060_circ_g.16 AT5G14060_circ_g.17 AT5G14060_circ_g.18 AT5G14060_circ_g.19 AT5G14060_circ_g.20 AT5G14060_circ_g.21 AT5G14060_circ_g.22 						
					
						Support reads
						2
					
						Tissues
						leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT5G14060.2:4
AT5G14060.3:4
AT5G14060.1:4

General Information
CircRNA Name	AT5G14060_circ_g.14
ID in PlantcircBase	ath_circ_038182
Alias	At_ciR5032
Organism	Arabidpsis thaliana
Position	chr5: 4537608-4538262 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	find_circ
Parent gene	AT5G14060
Parent gene annotation	Aspartokinase
Parent gene strand	+
Alternative splicing	AT5G14060_circ_g.2 AT5G14060_circ_g.3 AT5G14060_circ_g.4 AT5G14060_circ_g.5 AT5G14060_circ_g.6 AT5G14060_circ_g.7 AT5G14060_circ_g.8 AT5G14060_circ_g.9 AT5G14060_circ_g.10 AT5G14060_circ_g.11 AT5G14060_circ_g.12 AT5G14060_circ_g.13 AT5G14060_circ_g.15 AT5G14060_circ_g.16 AT5G14060_circ_g.17 AT5G14060_circ_g.18 AT5G14060_circ_g.19 AT5G14060_circ_g.20 AT5G14060_circ_g.21 AT5G14060_circ_g.22
Support reads	2
Tissues	leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT5G14060.2:4 AT5G14060.3:4 AT5G14060.1:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							CTTGTAGGCTGTGCTAACCAGCATTGTTCTGAAACGTAATGTGACCATGTTGGACATAGCAAGC
ACCCGTATGCTTGGCCAATATGGTTTCCTTGCCAAGggatggaggtcttgtgctatcactacgc
tgggtaggggtggcagtgatttgacagctacaacgattgggaaagcgctaggactgcgggaaat
tcaggtat

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							Transcript length: 426
Transcript exons: 4537608-4537703,4537775-4537891,4537973-4538092,4538170-
4538262
GGATGGAGGTCTTGTGCTATCACTACGCTGGGTAGGGGTGGCAGTGATTTGACAGCTACAACGA
TTGGGAAAGCGCTAGGACTGCGGGAAATTCAGGTTTGGAAAGATGTGGATGGAGTTTTGACTTG
TGATCCTAACATATATCCTGGAGCTCAATCTGTTCCGTACTTAACGTTCGATGAGGCAGCTGAG
CTTGCTTACTTTGGTGCCCAGGTGTTGCATCCACTGTCTATGAGGCCAGCAAGAGATGGCGACA
TTCCTGTGAGGGTTAAGAACTCGTACAACCCCACTGCTCCAGGAACTGTCATCACCAGATCAAG
AGACATGAGTAAGGCTGTGCTAACCAGCATTGTTCTGAAACGTAATGTGACCATGTTGGACATA
GCAAGCACCCGTATGCTTGGCCAATATGGTTTCCTTGCCAAG
						
						Genomic sequence
						
							GGATGGAGGTCTTGTGCTATCACTACGCTGGGTAGGGGTGGCAGTGATTTGACAGCTACAACGA
TTGGGAAAGCGCTAGGACTGCGGGAAATTCAGGTATTTGATGGCTTTGGCCAAGATTGCATCAT
GTAGATGAAATTTTGTTAAACAATGATTTTTTAATATAGGTTTGGAAAGATGTGGATGGAGTTT
TGACTTGTGATCCTAACATATATCCTGGAGCTCAATCTGTTCCGTACTTAACGTTCGATGAGGC
AGCTGAGCTTGCTTACTTTGGTGCCCAGGTAATCTCGTAGATTAGCTATGCACTATGCTGATGA
GTTCTTTTCTGTCAGATGGCTGAGCATATTCCTCTTCCATTGCAGGTGTTGCATCCACTGTCTA
TGAGGCCAGCAAGAGATGGCGACATTCCTGTGAGGGTTAAGAACTCGTACAACCCCACTGCTCC
AGGAACTGTCATCACCAGATCAAGAGACATGAGTAAGGTTCGTGAAACAGATGTGTTTTTTTAA
CTCCTTATATCAAAATATCAATGACCTTTTCCTCCTTTAATTCCTTGTAGGCTGTGCTAACCAG
CATTGTTCTGAAACGTAATGTGACCATGTTGGACATAGCAAGCACCCGTATGCTTGGCCAATAT
GGTTTCCTTGCCAAG

Sequences
Splice junction sequence	CTTGTAGGCTGTGCTAACCAGCATTGTTCTGAAACGTAATGTGACCATGTTGGACATAGCAAGC ACCCGTATGCTTGGCCAATATGGTTTCCTTGCCAAGggatggaggtcttgtgctatcactacgc tgggtaggggtggcagtgatttgacagctacaacgattgggaaagcgctaggactgcgggaaat tcaggtat
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 426 Transcript exons: 4537608-4537703,4537775-4537891,4537973-4538092,4538170- 4538262 GGATGGAGGTCTTGTGCTATCACTACGCTGGGTAGGGGTGGCAGTGATTTGACAGCTACAACGA TTGGGAAAGCGCTAGGACTGCGGGAAATTCAGGTTTGGAAAGATGTGGATGGAGTTTTGACTTG TGATCCTAACATATATCCTGGAGCTCAATCTGTTCCGTACTTAACGTTCGATGAGGCAGCTGAG CTTGCTTACTTTGGTGCCCAGGTGTTGCATCCACTGTCTATGAGGCCAGCAAGAGATGGCGACA TTCCTGTGAGGGTTAAGAACTCGTACAACCCCACTGCTCCAGGAACTGTCATCACCAGATCAAG AGACATGAGTAAGGCTGTGCTAACCAGCATTGTTCTGAAACGTAATGTGACCATGTTGGACATA GCAAGCACCCGTATGCTTGGCCAATATGGTTTCCTTGCCAAG
Genomic sequence	GGATGGAGGTCTTGTGCTATCACTACGCTGGGTAGGGGTGGCAGTGATTTGACAGCTACAACGA TTGGGAAAGCGCTAGGACTGCGGGAAATTCAGGTATTTGATGGCTTTGGCCAAGATTGCATCAT GTAGATGAAATTTTGTTAAACAATGATTTTTTAATATAGGTTTGGAAAGATGTGGATGGAGTTT TGACTTGTGATCCTAACATATATCCTGGAGCTCAATCTGTTCCGTACTTAACGTTCGATGAGGC AGCTGAGCTTGCTTACTTTGGTGCCCAGGTAATCTCGTAGATTAGCTATGCACTATGCTGATGA GTTCTTTTCTGTCAGATGGCTGAGCATATTCCTCTTCCATTGCAGGTGTTGCATCCACTGTCTA TGAGGCCAGCAAGAGATGGCGACATTCCTGTGAGGGTTAAGAACTCGTACAACCCCACTGCTCC AGGAACTGTCATCACCAGATCAAGAGACATGAGTAAGGTTCGTGAAACAGATGTGTTTTTTTAA CTCCTTATATCAAAATATCAATGACCTTTTCCTCCTTTAATTCCTTGTAGGCTGTGCTAACCAG CATTGTTCTGAAACGTAATGTGACCATGTTGGACATAGCAAGCACCCGTATGCTTGGCCAATAT GGTTTCCTTGCCAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.237563273

Conservation Information
Conserved circRNAs	NA
PMCS	0.237563273

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							4537991-4538259(+)
						
						Potential amino acid sequence
						
							MRPARDGDIPVRVKNSYNPTAPGTVITRSRDMSKAVLTSIVLKRNVTMLDIASTRMLGQYGFLA
KGWRSCAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPNIYPGAQSVPYLTFDEAA
ELAYFGAQVLHPLSMRPARDGDIPVRVKNSYNPTAPGTVITRSRDMSKAVLTSIVLKRNVTMLD
IASTRMLGQYGFLAKGWRSCAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPNIYP
GAQSVPYLTFDEAAELAYFGAQVLHPLSMRPARDGDIPVRVKNSYNPTAPGTVITRSRDMSKAV
LTSIVLKRNVTMLDIASTRMLGQYGFLAKGWRSCAITTLGRGGSDLTATTIGKALGLREIQVWK
DVDGVLTCDPNIYPGAQSVPYLTFDEAAELAYFGAQVLHPLSMRPARDGDIPVRVKNSYNPTAP
GTVITRSRDMSKAVLTSIVLKRNVTMLDIASTRMLGQYGFLAK(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	4537991-4538259(+)
Potential amino acid sequence	MRPARDGDIPVRVKNSYNPTAPGTVITRSRDMSKAVLTSIVLKRNVTMLDIASTRMLGQYGFLA KGWRSCAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPNIYPGAQSVPYLTFDEAA ELAYFGAQVLHPLSMRPARDGDIPVRVKNSYNPTAPGTVITRSRDMSKAVLTSIVLKRNVTMLD IASTRMLGQYGFLAKGWRSCAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPNIYP GAQSVPYLTFDEAAELAYFGAQVLHPLSMRPARDGDIPVRVKNSYNPTAPGTVITRSRDMSKAV LTSIVLKRNVTMLDIASTRMLGQYGFLAKGWRSCAITTLGRGGSDLTATTIGKALGLREIQVWK DVDGVLTCDPNIYPGAQSVPYLTFDEAAELAYFGAQVLHPLSMRPARDGDIPVRVKNSYNPTAP GTVITRSRDMSKAVLTSIVLKRNVTMLDIASTRMLGQYGFLAK(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of AT5G14060_circ_g.14

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