Detail information of Os01g0316900_circ_g.1


General Information
CircRNA Name Os01g0316900_circ_g.1
ID in PlantcircBase osa_circ_001530
Alias Os_ciR2635
Organism Oryza sativa
Position chr1: 11974551-11975195  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os01g0316900
Parent gene annotation Conserved hypothetical protein. (Os01t0316900-01)
Parent gene strand +
Alternative splicing Os01g0316900_circ_g.2 Os01g0317125_circ_g.1 Os01g0317125_circ_g.2 Os01g0317125_circ_g.3
Support reads 5/3
Tissues root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0316900-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTGCTGCGAGACCGATGATGAGGCTGACCATGGTGGTTCGGAAGTGGATTCTCCATTTTCGGA
GAATGCTGATGGTGTTCAAGCATTGATTCGGCCTAGgtgccgggggggtttcctcgattctggc
gcggttttgcttagaggaattccggatttcttagcggaattctgatttccgggctgttgcgagg
tgcatcta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 181
Transcript exons: 11974551-11974629,11975094-11975195
GTGCCGGGGGGGTTTCCTCGATTCTGGCGCGGTTTTGCTTAGAGGAATTCCGGATTTCTTAGCG
GAATTCTGATTTCCGCTCTTGCTGCGAGACCGATGATGAGGCTGACCATGGTGGTTCGGAAGTG
GATTCTCCATTTTCGGAGAATGCTGATGGTGTTCAAGCATTGATTCGGCCTAG

Transcript length: 645
Transcript exons: 11974551-11975195
GTGCCGGGGGGGTTTCCTCGATTCTGGCGCGGTTTTGCTTAGAGGAATTCCGGATTTCTTAGCG
GAATTCTGATTTCCGGGCTGTTGCGAGGTGCATCTACCAGCCATGGCGCCGGCGCCGGCCGTGG
ATGCGGAGGGGGAGTGTGGCGGGGGGAAGAGCCACAACACCCTCAAGCCCGACGGTGTTCGTGT
AGCTGCAGCCTCTACCACCCTGGACTCCTCGGATAGCCATGGTCCAGCCGCTGATGTTCAGGGC
GGGGGTGGCTCCGGCGAGAGGTTGGACTCCTCCGACGGCGAGGGACGAGCCACGGATGTTCAGG
GCAGGAGCAGCGCCGGGGAGAGCCTGGTGGTGAAATCCGAGCACGCGTGCGCGGCGGATGACCC
CGTGGGTGACGGTGCCCTTCTCGCCCCTGCCAACAAGCCTACTGGCGCGGACCCTTTGGCGGTA
GCATCCTCCTCGCATGACATCGATGCGGCGAGTGCTGATCCCGCAAACGACGAGGAAGACGGGG
ACACCACGGAATGCTCGAGTTCATTTGGGAACTCTTGCTGCGAGACCGATGATGAGGCTGACCA
TGGTGGTTCGGAAGTGGATTCTCCATTTTCGGAGAATGCTGATGGTGTTCAAGCATTGATTCGG
CCTAG

Genomic sequence GTGCCGGGGGGGTTTCCTCGATTCTGGCGCGGTTTTGCTTAGAGGAATTCCGGATTTCTTAGCG
GAATTCTGATTTCCGGGCTGTTGCGAGGTGCATCTACCAGCCATGGCGCCGGCGCCGGCCGTGG
ATGCGGAGGGGGAGTGTGGCGGGGGGAAGAGCCACAACACCCTCAAGCCCGACGGTGTTCGTGT
AGCTGCAGCCTCTACCACCCTGGACTCCTCGGATAGCCATGGTCCAGCCGCTGATGTTCAGGGC
GGGGGTGGCTCCGGCGAGAGGTTGGACTCCTCCGACGGCGAGGGACGAGCCACGGATGTTCAGG
GCAGGAGCAGCGCCGGGGAGAGCCTGGTGGTGAAATCCGAGCACGCGTGCGCGGCGGATGACCC
CGTGGGTGACGGTGCCCTTCTCGCCCCTGCCAACAAGCCTACTGGCGCGGACCCTTTGGCGGTA
GCATCCTCCTCGCATGACATCGATGCGGCGAGTGCTGATCCCGCAAACGACGAGGAAGACGGGG
ACACCACGGAATGCTCGAGTTCATTTGGGAACTCTTGCTGCGAGACCGATGATGAGGCTGACCA
TGGTGGTTCGGAAGTGGATTCTCCATTTTCGGAGAATGCTGATGGTGTTCAAGCATTGATTCGG
CCTAG
Conservation Information
Conserved circRNAs osi_circ_002006* osi_circ_009278
PMCS 0.327390181
Functional Information
Coding potential Y
Potential coding position 11974658-11974620(+)
11974660-11975177(-)
Potential amino acid sequence MAPAPAVDAEGECGGGKSHNTLKPDGVRVAAASTTLDSSDSHGPAADVQGGGGSGERLDSSDGE
GRATDVQGRSSAGESLVVKSEHACAADDPVGDGALLAPANKPTGADPLAVASSSHDIDAASADP
ANDEEDGDTTECSSSFGNSCCETDDEADHGGSEVDSPFSENADGVQALIRPRCRGGFLDSGAVL
LRGIPDFLAEF*(+)
MAGRCTSQQPGNQNSAKKSGIPLSKTAPESRKPPRHLGRINA*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017