Detail information of Os01g0316900_circ_g.2


General Information
CircRNA Name Os01g0316900_circ_g.2
ID in PlantcircBase osa_circ_001531
Alias Os_ciR2711
Organism Oryza sativa
Position chr1: 11974551-11980083  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os01g0316900
Parent gene annotation Conserved hypothetical protein. (Os01t0316900-01)
Parent gene strand +
Alternative splicing Os01g0316900_circ_g.1 Os01g0317125_circ_g.1 Os01g0317125_circ_g.2 Os01g0317125_circ_g.3
Support reads 4/1
Tissues root/shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0316900-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGTAGCGAAGAAAAAAGTGGAGAGAGGTGCCAGTCACATAAGAAAGCCATCACTGTGGATTTA
CTCCTTCCAAATGGTCATATGGGAGATTTGTGCAAAgtgccgggggggtttcctcgattctggc
gcggttttgcttagaggaattccggatttcttagcggaattctgatttccgggctgttgcgagg
tgcatcta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 193
Transcript exons: 11974551-11974654,11979995-11980083
GTGCCGGGGGGGTTTCCTCGATTCTGGCGCGGTTTTGCTTAGAGGAATTCCGGATTTCTTAGCG
GAATTCTGATTTCCGGGCTGTTGCGAGGTGCATCTACCAGAAAAAAGTGGAGAGAGGTGCCAGT
CACATAAGAAAGCCATCACTGTGGATTTACTCCTTCCAAATGGTCATATGGGAGATTTGTGCAA
A

Transcript length: 200
Transcript exons: 11974551-11974666,11980000-11980083
GTGCCGGGGGGGTTTCCTCGATTCTGGCGCGGTTTTGCTTAGAGGAATTCCGGATTTCTTAGCG
GAATTCTGATTTCCGGGCTGTTGCGAGGTGCATCTACCAGCCATGGCGCCGGAGTGGAGAGAGG
TGCCAGTCACATAAGAAAGCCATCACTGTGGATTTACTCCTTCCAAATGGTCATATGGGAGATT
TGTGCAAA

Transcript length: 2829
Transcript exons: 11974551-11975195,11977790-11978100,11978211-11980083
GTGCCGGGGGGGTTTCCTCGATTCTGGCGCGGTTTTGCTTAGAGGAATTCCGGATTTCTTAGCG
GAATTCTGATTTCCGGGCTGTTGCGAGGTGCATCTACCAGCCATGGCGCCGGCGCCGGCCGTGG
ATGCGGAGGGGGAGTGTGGCGGGGGGAAGAGCCACAACACCCTCAAGCCCGACGGTGTTCGTGT
AGCTGCAGCCTCTACCACCCTGGACTCCTCGGATAGCCATGGTCCAGCCGCTGATGTTCAGGGC
GGGGGTGGCTCCGGCGAGAGGTTGGACTCCTCCGACGGCGAGGGACGAGCCACGGATGTTCAGG
GCAGGAGCAGCGCCGGGGAGAGCCTGGTGGTGAAATCCGAGCACGCGTGCGCGGCGGATGACCC
CGTGGGTGACGGTGCCCTTCTCGCCCCTGCCAACAAGCCTACTGGCGCGGACCCTTTGGCGGTA
GCATCCTCCTCGCATGACATCGATGCGGCGAGTGCTGATCCCGCAAACGACGAGGAAGACGGGG
ACACCACGGAATGCTCGAGTTCATTTGGGAACTCTTGCTGCGAGACCGATGATGAGGCTGACCA
TGGTGGTTCGGAAGTGGATTCTCCATTTTCGGAGAATGCTGATGGTGTTCAAGCATTGATTCGG
CCTAGAAAGAAAAAGGTAACTGCTGAGTGGAGGAGTGCTGTCCGCCCAATGATGTGGAGATGTC
AGTGGTTAGAGTTGCGCATGAAGGACCTTTTATCTCAAGTGTCGAAGTATGACCGAGAGCTTGC
TCTAATCAACAAAGGAAAAGAATTGCAGCAGGCAGTAAACATGACAAATGGTTCTAGGTCAGAA
TCAGCACAGTCTTCCAAAAGCCGTGAAAATAGTTGTATGGAGAGGCGAAAGAGGAGAAGACTTG
AAGAAACTGTGAATACCTCATTGTACATCAAGAAGCACGAGATATTGTCATACTTCTTTGATAA
ACAGAATAAGGGTGCTGAAACAGATGGCATCTTAATTGATGACGATAGCAGTGGCCCAGGTATG
TATATGGTAGTGTGTCCACTTGTATAGTTGTGCTGGAGTTTACACAGGAAGCATTGTAGTTAGC
AAAAATTTGCATTAAACCAATCTGCAATTTACCTAATTATGTGTGTCACATTTCTAGTGGTTAA
TTGATAATAGAGTCTTTAGGAGCTTAAGGACTGTTAAATCTATCATTAGCTAAGTGCTTGCGTG
TCGCAAGTTCTCCCCTACACTTCACAGGTTCCTCTCCCGATTGAGCTGCTTGTTTTCATCTCCT
CTTTGTTGTATTAATGGATGGTATGGCCTTGAATGTGTAAGAACTTATCAACCAAATGGAGATG
AAAAATGTAAAACATTTTGCTGCATTTTTAATTTCTAAATACTTAAAAACACAACATTGAAATA
GACCATAGCAACACTGTACTGATGATCAGGTACAATGCACTAATAACTAGGTGTTGAATGATTC
ATCTGCGCAGCCTATAGTAATCAGAATGGCATGTGTGTCCTCGCCACGATTGCCAGCACAGTTG
ACCAGGACCCAGCCTGGTGTCCACCAATGCGTGTTGACGTCCTTGCCTAGAAACCGTGCGGGCA
ACCCACGCCCTATCGCCCAATCATTCATTGCCTGTCCGCATGCTATGCTTTAAGTCTTTCCCAG
GTCCCAATTGAGATCACTCCCATTTCCTGACTATCCATTACCCAGGTAATCAACAGAACAATGC
AACTCTAGCCCAAATTAGGTGGTAAACATAAGGTAGAAGTTTGATGACCCACCCAACTTCTAAG
CCTGACCAGTTAATCTAAGACCAAGGCAGCCCAGTGTGGCATCTTATTCTTCCCAGTCCCAGCT
GCCAGCCATGTCTAAGACCAAGCGTACTTGCTGCCCCTTGCCAGTTATTTGAATTAGCTTGCTA
GTGTCTATGGACTGGGTACCTGGGGAGTTCCAATTTAGGTGGGGCTGGAACGCCCACAAGCCCC
AATGGTAAGTTCACAGTCACGGAGAAAAGCTTGGCTATAAATGACACCTTGCTGGTATCCTTGG
TAAAATGTATGTGTCTTGTTAATGATTAAAAGTAGTATACATCTCATTGTCAGTGTGTTACCCA
CATCTTTCCTTACCGCGATGTAAACATTTTGGTATCTTCGTACTTTTATTTTTAGTGTTATCCA
TTATAATTTTGGATTGAACTAATGAAGGGCAGCATACTTGAGCTATTCAGACATTGGTTATGTT
GGCATTGCAAAATGAAATCTATCTTCATTACCTAATGTCTGAATTTTACATGATTTCTCATTGC
CAACGCTAACTCTTTATACGATCGATTCCTACAGTTGGCAATGATGTTAAAGGTGGGATCCATA
CTGTTGGGTTGCTTGAGCCCAAGGAATATGATATGGTTGCGGAGCAACTCACACTGCAGAAATT
TCTTTTGACAATTGATGGTATTCGGTCCCAAGTTCTTCGGCTACAAGATCGTCTCAGTAAGGTT
CGTTCAAAACAAGAAAACATGGTTTCCTTGGTGGACCATGCCCATATCAAGGTGTCTGAGAAGA
GGCTAAGGACTCAAAAACGGTCATTCTCATATAAGAAAGATAGATATAGTAAATCAAAGAAAAA
GAAGAATCTAAACATTTTATCGAAGGAAGAGGATAAACCAGCTCATGCAGTAATATCTACTTTG
TCTAAGAGGGCACCAGATTGCCAAACAGAAGTTACAATGTACAGTAGCGAAGAAAAAAGTGGAG
AGAGGTGCCAGTCACATAAGAAAGCCATCACTGTGGATTTACTCCTTCCAAATGGTCATATGGG
AGATTTGTGCAAA

Transcript length: 291
Transcript exons: 11974551-11974672,11979911-11980011,11980016-11980083
GTGCCGGGGGGGTTTCCTCGATTCTGGCGCGGTTTTGCTTAGAGGAATTCCGGATTTCTTAGCG
GAATTCTGATTTCCGGGCTGTTGCGAGGTGCATCTACCAGCCATGGCGCCGGCGCCGGATAAAC
CAGCTCATGCAGTAATATCTACTTTGTCTAAGAGGGCACCAGATTGCCAAACAGAAGTTACAAT
GTACAGTAGCGAAGAAAAAAGTGGAGAGAGGAGTCACATAAGAAAGCCATCACTGTGGATTTAC
TCCTTCCAAATGGTCATATGGGAGATTTGTGCAAA

Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs osi_circ_002007* osi_circ_009279
PMCS 0.449748561
Functional Information
Coding potential Y
Potential coding position 11979656-11974589(+)
11980059-11974620(+)
11974660-11980047(-)
Potential amino acid sequence MVAEQLTLQKFLLTIDGIRSQVLRLQDRLSKVRSKQENMVSLVDHAHIKVSEKRLRTQKRSFSY
KKDRYSKSKKKKNLNILSKEEDKPAHAVISTLSKRAPDCQTEVTMYSSEEKSGERCQSHKKAIT
VDLLLPNGHMGDLCKVPGGFPRFWRGFA*(+)
MVIWEICAKCRGGFLDSGAVLLRGIPDFLAEF*(+)
MAGRCTSQQPGNQNSAKKSGIPLSKTAPESRKPPRHFAQISHMTIWKE*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017