Detail information of Os04g0568800_circ_g.3


General Information
CircRNA Name Os04g0568800_circ_g.3
ID in PlantcircBase osa_circ_024935
Alias NA
Organism Oryza sativa
Position chr4: 28584733-28586261  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method circRNA_finder, find_circ
Parent gene Os04g0568800
Parent gene annotation Similar to OSIGBa0139P06.4 protein. (Os04t0568800-01)
Parent gene strand -
Alternative splicing Os04g0568800_circ_g.1 Os04g0568800_circ_g.2
Support reads 2
Tissues seed
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Os04t0568800-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCTAACCATGGCTTTTTCATCATCATCATCATCATCAGTGCGGCTTGTTTCTGAAATAACTAC
CAAGTTTAGCATGCCCTCAAAGATTGAGTTGTCAACatgcttatatgcagcttgaatggatctg
acaacaagaatgtgaatcaacttagattcttgtgtagcatctagtggggtcccaatgagctgaa
attgacaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGCTTATATGCAGCTTGAATGGATCTGACAACAAGAATGTGAATCAACTTAGATTCTTGTGTA
GCATCTAGTGGGGTCCCAATGAGCTGAAATTGACAAAAACACATCAAAGCATAGTACTTAGAAG
AACCTCATAAGGAAAATTGAGAATTTTAGTAGCATGACACAATGATCAAGAGTAAAATGCAAGG
CCAGTCCTTAAACTTGGGCTAGGGTGTCATCTAGGTCCATGAACTTGTAAAACGGGGTCCTTAG
GGTGCATTGGTTTGAAGCACAAGGGGTGAAAAGTCCCTCGTTTTCTGCGCGCACGCTTCCCGAA
TTGCTAAGCGGTGTGTTTTTTGCAAAAAAAAAAATATATAGAAAAGTTGCTTTAAAAATCGTAT
TAATCAATTTTTCAAGTTTGAAATAGCTAATACCCAATTAATCATATGCTAATGGCTCACCTCG
TTTTACTTATCTTCTCAATCTTCTCCTTTTCCCTCTAAAAAACACCCTTAATCTTGGTTTAATG
TATCACTCGAGGCCCAAAGTGCAGAGGATGCAACTCAGGCTTGTCCACAGTGACGAGAATTTTG
CACTTACGCCTCTTCACTATAGTATGCCCCGAAATCGACTCCTACCACCCCAAATCAACAAATA
TGCATTTCTCAGCATCCAGCAAATTCATAGTTTAAGCCATGCACCAAAAGATTTGGGAGTGGTG
GGAGTAGACTTGAAGGCATACTGTAGCATGAGGGGGCTAAATGCAAAATTCTCACCACCGTGGA
TTGCCACATCAGCACCCAAGCTGCGTCATCTGCACTTTGGACATCGGATGATACATTAAACCAA
GATTATGGACCCAAATACGCATTTTACAACTTCAAGGACCTAGATGACACCCCAGTCCAAGTTT
AGACTTGCCATGTATGGTAAACATATCCTAGGGGACAACTAGTTTGATGGCTGGCTAGTTATAC
AGAACTCAAGAAAAATATTTACATCATTCAACAAGCATAGTAAAACTAATATTCTATGATTTAA
ACACTTCCAAAAAGTTTTAAACATGTGATTGTTTTTATTCAAACAAAATGGCTTAAACAACATT
ATACTGTTCTCTGTAATTGAATGAGAGTGATACTGCATACTGGTTTCTCTCCCCCTCTTGCCTA
GCAAGGTTAGCAGACAAGAATACATGTTTGGTTTCCACGCTTGATTTTGTTTTGGGGAACATAA
GAAGGCTTCCCTGCTTTGGAGAAGACAATCTATTTGTCTCTCCTTTCCTAGCAAAGATTTCCTT
GCTCACTATCAAGGCTAGGGAAAGCTAGCCAAAGAGCAAAACATTCCCATGCTCTTTGTGGATG
AAAAGTGGCAAGCCCATAATTCGTAATGTTTTGAGTTTCAAAAAGTGAAGCATATTATGCCAGT
ACTTTAGCATAAGTATAATAAATCTAACCATGGCTTTTTCATCATCATCATCATCATCAGTGCG
GCTTGTTTCTGAAATAACTACCAAGTTTAGCATGCCCTCAAAGATTGAGTTGTCAAC
Conservation Information
Conserved circRNAs osi_circ_005673*
PMCS 0.212269315
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017