Detail information of BGIOSGA035820_circ_igg.1


General Information
CircRNA Name BGIOSGA035820_circ_igg.1
ID in PlantcircBase osi_circ_009983
Alias Chr12:25785490_25790366(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr12: 21945873-21950751  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA035820_circ_igg.2 BGIOSGA035820_circ_igg.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTACTCACCACCATGGAACAGGGCAGATGCTTGCCTCCATTTCCCATTGGAGAAGACAGCACC
GGCGCAGGAGAAGGAATCCCATTCATGAAATGCAGAccttaatttttttggccgggctggcaag
gttaatcttaactttgagtgccttcttctcccctcttgccttgtcaccagtcctgcgcttactc
tgcatttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTAATTTTTTTGGCCGGGCTGGCAAGGTTAATCTTAACTTTGAGTGCCTTCTTCTCCCCTCT
TGCCTTGTCACCAGTCCTGCGCTTACTCTGCATTTCAGAAAAGAGATTGGGCCTGAGATCATAC
AAAACCACATGTTCCTCCAACAGCTACTCCAGTCAAAATATTAAACTTTTACTATATCATGACA
GGATATTCCAATAGACCATTCTCTTAATAAGTTTGTGTCACATAAATATGAAAAATTAAATACA
AAATTCAAATATTTGAGAATGAGCATTATGTTATTTACCAAAGTGCAAAATTAACGTGAGTGTT
CAAGTAAGGTTGTATGATCATGCTTGTTATAGTACTGATACTTGTAGTTCCAACATCAAAACAG
GTAGTATCAAACTGAAACAATTAAGAAGTGTTGGTACAATATTTCAAGTGAACTCATGTGTATA
TTGCTTTAATGATAGTACCCCACACAATTTGTGATCAAGCTAGAGCAAAGTTTGGAGTATGCAA
AGGTAATTTAGTCAGAACAAAAACTGTGTTAGCGATTCATCATGTGAAAACTAGAACTTATTGT
TTATTCAGTGAGAAGTAGGCCCTAGTGCACGTATACATTAAGACAAGTCAAGGCAAGAAGCATT
AGCTGGAAATGGGATAATGAAAGGCGTTGCAAATGTGGTAAATTACCAAATGCATTATGAACTA
AAGCTGAATGTGTATTCGTGCTTTTAAGTAAACAAGGTTAGGAAATATCTTTATACCTTGGGCT
GACCAAGACTCGTGGCACTGCACCCAGAAACTTGAGGTCCATCAACTGAATCTAAATGTCAAAA
CGATGCTTTAGTATATTTTCAATATCCATAAAGTCCATCAGGGGTCCTTAGATATATGGTAAAA
GTAGTTAATAACAGGTGAAATGAATAGAATAATACAAATTTTCAGCTGTCCATGGATAACTTAA
ATCCCTATAAATTTCAAAAGAAAACTATCCAAATTTCATCAAGGTAGTAAGATATGTTAAGGCT
CTAATTGCCTCTTCATATGGACATTTTTCTGCAAAACCTATAATTAAGATTTCTACCCAATCAA
AACTGTTAAAAGCCTATTCATGATTATATGCAGATAATCAGTACTATTTTGCACATGGTTATCT
TGTAGTCTAGTCAGATCTATGCACGATGCAACGAAATTCAGATGAAGCTACTAGAACTAAAACC
CCTTTTACTATATGAGGGTTGTCCTGGAAAAGAAGTGATTCAGTGATAAAACGAAGTTGTCATC
AAGCATGATTTCTATAACAATAACTGGGAAACTCCCAGATCCATGGCGATGGAAAATCTTTCTC
AGATAAGTGTATATTTCGATTTTTGTAGTAATATGTAGAATAAACATAATAGAAGAACACCTTT
TAAATGTTAAATCAGGCTAAGCAAGGCTGAATTTGACAAATAAAGCAATAATCCCCAGCTACAA
GCTTCCAATTAGGAACAAGATCCTATTTTACTCAGCCTATTTGGAACATGTGAATTTCTCCAGG
AACAGTTCAATTCCTAAAGAAGCTCCCATATTCCAAATAAGATCGAAGCTCCCATATTCCAAAT
AAGATCGACGATATTTCTAACAATTGACCTGTGGCTTAAAAAAGAAAAAACTGTATTGCATTGT
GTTCACACAAACATTGCTTGACCTAGGTAGGTGAGCTCAGCTGCCAATAGACACAAAACCCATA
ACATACCACACAAAAGCATAAAAAAACAAGACAAACTACTTAGTTGTGTACAATCTATTTGCTT
TAGCCTAACTACACCTTAAGCCTGAACCCATGAATAGGCCTACTGCTAACATGAATTAAGATAG
AGCATTGCCACCTTGAGACATGGCTGAAGCAACCATCTGAAATCCATCGTGCCCCATGAAGCCT
GCCGTTATGTCTTCCAAAGAAATCAGCAACAGATCTGTATAACCAAGCACCAGAATGATGGAGT
GAGCAGTAGAAATGAAAGAAAATTCTCAAAATTTCTAACCAAGCACATAGAAATCAGTAGAGTA
TCTACGGGGATCTAGACATGCTCAAAGAGGAACACAAAACTCGCATTCACTTGAAACACTTACA
GGAAAGGGGAAACAGGAAGATCAAACCGTAAGAGGAAACACGCAAAGAGTGAGAGAGAGTGAGA
TAGAGATAAGAGTCAGAGATTGAGAGATAGATATATATAGAGAGCACAAGACTCGACGGAGAGA
TGTATATAAATAGGAAAAAAAAGGAATCCATAATAATCTTCTCCCAAAGCTTTAATGCAGATTG
ACTCTTAATGACAAACAAATCCTTCTCCAGCATCCTTATCTTTAATTGCCAAGCCGCAACGCGA
CAAAACATGATGTAGACAGAACTACACTACCACTAGTGCTAAATGCTAGAACAGATCTTGGGCA
TGCAATTAAATGCCAAGAAAAATATTTACAAGCGACAATCACATTCATACCACTAAAATATCAC
CATGACGTGTGTTAAGAAATGCATTGGTACCACATTTAAAACTGAACTGGATTCACCAAAAAAA
ATTATTGCATTCATACTACATTCACTAAAATAGCGGCAATCGCATTCATACCACTAAAATAGCA
CCGTGCCGTGTGTTCAGAAATGCATTGGTACATGGAACCAAATTTAAAACTGAACTGGGTTCAC
CAAAATATTATCACAAATTACAAGGTGTTTGTTTCACACTATCACATACCACTTTTATTGAACC
AAGTAAACAAGCGTACATCTGTTCCAATTATTCTTATGTCATTTTATTTTCCTAACTAAGTGGG
TTGAACTTGAACGTCTTTCTTCTTTAAAGACAATATGCACAAATCTTTTAGTTCTCCAAAAAAA
AGGGGCATACTAAATTAGCATTCTATAACCTTGTGATATTGCATAGAAATTTTAGGCCGTAATG
TTGTTGAAAGGGAATATATATGATATGTACACCTTTGTTCAATGGTTGATACTATTATTAAGTG
TTAGACGCCAATCCCTTTTTTTCAACGCTGTTAGATGTCAATCCTAATGCCTTAGAACTATGTA
GTACTTAGTTTTCCAAGCAGGTCACTTTGGCACTGTTTTATCGTGTCATATTTCACAACAGAAT
TTAAAGTTATCTCGTTGTTTAGTGTTAATTTGGTAAATTTGGTATTTAGTGATATCATGCATAA
TTAATTTGATAGATGGATGTATATGATTTCAATGTGAATAAGATGTCATACCATGCATTTTGAG
ATAGATTACCCAATTTGAAATTACTATATATTGTTGTTCGAGGCATTATCTAGTTGCGGGAGTG
ATCGGCGGTGATTGCTGTGGCTGTTGTGTAGCTGCTGCCAGCTGCAGCCAATCTCAATTGCAGC
AGTGGCTGTGGTTGCAACAACAAGCACAACCGATCAACCCTGCGTAAATTCTATAGTGCGGGGT
GTTTTCTGTATATTTTGTATAGCTTCCTTGTATACATGTTATCCCAGTTTGGCCCATTCCACAA
TCCTCAACAACCGCAAACAAATGGAGTCTGTTGTGCTAAATATATGGATGGTTACGCATGTGCA
GGATGTGCACATCTAGCTAATTCTTTGAGCATCTACACGCTTTAGTTTCCTTATTTTTTGTGAG
ATCTGTTATAAGAATGTTAATACTTTCATCCTGATCTTGCAACTTGAAGCCAGAATTTCTTCCT
TTTTACCTTTTCAGAAAAGACACTAGTTCTCCATGCTGGACCTTTTCTATTGGAGAATTTCAGA
AAATGCTGGCATTTCGCTATTTTGACTATTGCAACTTCAAACCACAGTTAAGACATTCATGAAA
TACTCTCCTTAAAACTGTTGTATAAAGAAAACAAAGACAAAAGGGAGGGGGAATGGTCGCTGCT
GAAATAGTGAATTTGATCTCAAAACTCAAAACTCAAATCACAAATAGTTTGTACACTAAAGTGC
AAATTATGTTAAGAAAGATGTAGCACAGGGAAATTTCTGGGCATGTTAATCAAGAGATTTAAAA
GTTTGTCAGATACTATAGGACTACAGATGATTATATTCTTTGAGGCATGTTAATCAAGAGATTT
AAAAGTTTGTCAGGACTACAGATGATTATATTCTTTGAGGCATGTTAATCAAGAGATTTAAAAG
TTTGTCAGATACTATGGGACTGCAGATGATTATTCTTTGAGGTCTGGGAACTTTGAACCAAAAG
GAAGAACTTTTAAGGCTAAATCACTTCAGGTCCTCAATGATTATAATCAAACCTACAGCCCTTC
GCATGACAACAAATGTTATTAATCATTGAGATGACGGATTGTTATCGATTGCCAAAAACTGTTA
TGAAGCTTCCTTGTGTGTTGTATCACGAAAATCAACTACCTTTGGTAATAGCAGGAAAGAACTC
CCTGATGCTATCCTGTTGTAGAACCAGAACCACCAACTGACCAACCATAAAATGCATAGACTTG
ATATCGCCCATGCATTTTCATTGTTCACAAATTAAAAGCCAGTGACATGACATGCAAACAAGCA
GCAGTAATAATCATTGACCAAGCAGTAGAAGCGCAGCACTAACATTACAAGCCTGGTTCATCAT
CCCTGCAGAGATTGCCAACCGTTGGTTTTGATCTCCTTTATGACCATCAAAGAAATCCCATCAT
TCCATGGCTGCCTGCAAGCAACAACCACAATCACTCAATTCATCCAGGCATCCAGCAATGTGAA
ACAGTCATGGTTCACAATAAGAGACAGACAACAATAATATAGAACTACTCACCACCATGGAACA
GGGCAGATGCTTGCCTCCATTTCCCATTGGAGAAGACAGCACCGGCGCAGGAGAAGGAATCCCA
TTCATGAAATGCAGA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021