Detail information of BGIOSGA035820_circ_igg.3


General Information
CircRNA Name BGIOSGA035820_circ_igg.3
ID in PlantcircBase osi_circ_003533
Alias 12:21945874|21950751
Organism Oryza sativa ssp. indica
Position chr12: 21945874-21950751  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA035820_circ_igg.1 BGIOSGA035820_circ_igg.2
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTACTCACCACCATGGAACAGGGCAGATGCTTGCCTCCATTTCCCATTGGAGAAGACAGCACC
GGCGCAGGAGAAGGAATCCCATTCATGAAATGCAGActtaatttttttggccgggctggcaagg
ttaatcttaactttgagtgccttcttctcccctcttgccttgtcaccagtcctgcgcttactct
gcatttca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTAATTTTTTTGGCCGGGCTGGCAAGGTTAATCTTAACTTTGAGTGCCTTCTTCTCCCCTCTT
GCCTTGTCACCAGTCCTGCGCTTACTCTGCATTTCAGAAAAGAGATTGGGCCTGAGATCATACA
AAACCACATGTTCCTCCAACAGCTACTCCAGTCAAAATATTAAACTTTTACTATATCATGACAG
GATATTCCAATAGACCATTCTCTTAATAAGTTTGTGTCACATAAATATGAAAAATTAAATACAA
AATTCAAATATTTGAGAATGAGCATTATGTTATTTACCAAAGTGCAAAATTAACGTGAGTGTTC
AAGTAAGGTTGTATGATCATGCTTGTTATAGTACTGATACTTGTAGTTCCAACATCAAAACAGG
TAGTATCAAACTGAAACAATTAAGAAGTGTTGGTACAATATTTCAAGTGAACTCATGTGTATAT
TGCTTTAATGATAGTACCCCACACAATTTGTGATCAAGCTAGAGCAAAGTTTGGAGTATGCAAA
GGTAATTTAGTCAGAACAAAAACTGTGTTAGCGATTCATCATGTGAAAACTAGAACTTATTGTT
TATTCAGTGAGAAGTAGGCCCTAGTGCACGTATACATTAAGACAAGTCAAGGCAAGAAGCATTA
GCTGGAAATGGGATAATGAAAGGCGTTGCAAATGTGGTAAATTACCAAATGCATTATGAACTAA
AGCTGAATGTGTATTCGTGCTTTTAAGTAAACAAGGTTAGGAAATATCTTTATACCTTGGGCTG
ACCAAGACTCGTGGCACTGCACCCAGAAACTTGAGGTCCATCAACTGAATCTAAATGTCAAAAC
GATGCTTTAGTATATTTTCAATATCCATAAAGTCCATCAGGGGTCCTTAGATATATGGTAAAAG
TAGTTAATAACAGGTGAAATGAATAGAATAATACAAATTTTCAGCTGTCCATGGATAACTTAAA
TCCCTATAAATTTCAAAAGAAAACTATCCAAATTTCATCAAGGTAGTAAGATATGTTAAGGCTC
TAATTGCCTCTTCATATGGACATTTTTCTGCAAAACCTATAATTAAGATTTCTACCCAATCAAA
ACTGTTAAAAGCCTATTCATGATTATATGCAGATAATCAGTACTATTTTGCACATGGTTATCTT
GTAGTCTAGTCAGATCTATGCACGATGCAACGAAATTCAGATGAAGCTACTAGAACTAAAACCC
CTTTTACTATATGAGGGTTGTCCTGGAAAAGAAGTGATTCAGTGATAAAACGAAGTTGTCATCA
AGCATGATTTCTATAACAATAACTGGGAAACTCCCAGATCCATGGCGATGGAAAATCTTTCTCA
GATAAGTGTATATTTCGATTTTTGTAGTAATATGTAGAATAAACATAATAGAAGAACACCTTTT
AAATGTTAAATCAGGCTAAGCAAGGCTGAATTTGACAAATAAAGCAATAATCCCCAGCTACAAG
CTTCCAATTAGGAACAAGATCCTATTTTACTCAGCCTATTTGGAACATGTGAATTTCTCCAGGA
ACAGTTCAATTCCTAAAGAAGCTCCCATATTCCAAATAAGATCGAAGCTCCCATATTCCAAATA
AGATCGACGATATTTCTAACAATTGACCTGTGGCTTAAAAAAGAAAAAACTGTATTGCATTGTG
TTCACACAAACATTGCTTGACCTAGGTAGGTGAGCTCAGCTGCCAATAGACACAAAACCCATAA
CATACCACACAAAAGCATAAAAAAACAAGACAAACTACTTAGTTGTGTACAATCTATTTGCTTT
AGCCTAACTACACCTTAAGCCTGAACCCATGAATAGGCCTACTGCTAACATGAATTAAGATAGA
GCATTGCCACCTTGAGACATGGCTGAAGCAACCATCTGAAATCCATCGTGCCCCATGAAGCCTG
CCGTTATGTCTTCCAAAGAAATCAGCAACAGATCTGTATAACCAAGCACCAGAATGATGGAGTG
AGCAGTAGAAATGAAAGAAAATTCTCAAAATTTCTAACCAAGCACATAGAAATCAGTAGAGTAT
CTACGGGGATCTAGACATGCTCAAAGAGGAACACAAAACTCGCATTCACTTGAAACACTTACAG
GAAAGGGGAAACAGGAAGATCAAACCGTAAGAGGAAACACGCAAAGAGTGAGAGAGAGTGAGAT
AGAGATAAGAGTCAGAGATTGAGAGATAGATATATATAGAGAGCACAAGACTCGACGGAGAGAT
GTATATAAATAGGAAAAAAAAGGAATCCATAATAATCTTCTCCCAAAGCTTTAATGCAGATTGA
CTCTTAATGACAAACAAATCCTTCTCCAGCATCCTTATCTTTAATTGCCAAGCCGCAACGCGAC
AAAACATGATGTAGACAGAACTACACTACCACTAGTGCTAAATGCTAGAACAGATCTTGGGCAT
GCAATTAAATGCCAAGAAAAATATTTACAAGCGACAATCACATTCATACCACTAAAATATCACC
ATGACGTGTGTTAAGAAATGCATTGGTACCACATTTAAAACTGAACTGGATTCACCAAAAAAAA
TTATTGCATTCATACTACATTCACTAAAATAGCGGCAATCGCATTCATACCACTAAAATAGCAC
CGTGCCGTGTGTTCAGAAATGCATTGGTACATGGAACCAAATTTAAAACTGAACTGGGTTCACC
AAAATATTATCACAAATTACAAGGTGTTTGTTTCACACTATCACATACCACTTTTATTGAACCA
AGTAAACAAGCGTACATCTGTTCCAATTATTCTTATGTCATTTTATTTTCCTAACTAAGTGGGT
TGAACTTGAACGTCTTTCTTCTTTAAAGACAATATGCACAAATCTTTTAGTTCTCCAAAAAAAA
GGGGCATACTAAATTAGCATTCTATAACCTTGTGATATTGCATAGAAATTTTAGGCCGTAATGT
TGTTGAAAGGGAATATATATGATATGTACACCTTTGTTCAATGGTTGATACTATTATTAAGTGT
TAGACGCCAATCCCTTTTTTTCAACGCTGTTAGATGTCAATCCTAATGCCTTAGAACTATGTAG
TACTTAGTTTTCCAAGCAGGTCACTTTGGCACTGTTTTATCGTGTCATATTTCACAACAGAATT
TAAAGTTATCTCGTTGTTTAGTGTTAATTTGGTAAATTTGGTATTTAGTGATATCATGCATAAT
TAATTTGATAGATGGATGTATATGATTTCAATGTGAATAAGATGTCATACCATGCATTTTGAGA
TAGATTACCCAATTTGAAATTACTATATATTGTTGTTCGAGGCATTATCTAGTTGCGGGAGTGA
TCGGCGGTGATTGCTGTGGCTGTTGTGTAGCTGCTGCCAGCTGCAGCCAATCTCAATTGCAGCA
GTGGCTGTGGTTGCAACAACAAGCACAACCGATCAACCCTGCGTAAATTCTATAGTGCGGGGTG
TTTTCTGTATATTTTGTATAGCTTCCTTGTATACATGTTATCCCAGTTTGGCCCATTCCACAAT
CCTCAACAACCGCAAACAAATGGAGTCTGTTGTGCTAAATATATGGATGGTTACGCATGTGCAG
GATGTGCACATCTAGCTAATTCTTTGAGCATCTACACGCTTTAGTTTCCTTATTTTTTGTGAGA
TCTGTTATAAGAATGTTAATACTTTCATCCTGATCTTGCAACTTGAAGCCAGAATTTCTTCCTT
TTTACCTTTTCAGAAAAGACACTAGTTCTCCATGCTGGACCTTTTCTATTGGAGAATTTCAGAA
AATGCTGGCATTTCGCTATTTTGACTATTGCAACTTCAAACCACAGTTAAGACATTCATGAAAT
ACTCTCCTTAAAACTGTTGTATAAAGAAAACAAAGACAAAAGGGAGGGGGAATGGTCGCTGCTG
AAATAGTGAATTTGATCTCAAAACTCAAAACTCAAATCACAAATAGTTTGTACACTAAAGTGCA
AATTATGTTAAGAAAGATGTAGCACAGGGAAATTTCTGGGCATGTTAATCAAGAGATTTAAAAG
TTTGTCAGATACTATAGGACTACAGATGATTATATTCTTTGAGGCATGTTAATCAAGAGATTTA
AAAGTTTGTCAGGACTACAGATGATTATATTCTTTGAGGCATGTTAATCAAGAGATTTAAAAGT
TTGTCAGATACTATGGGACTGCAGATGATTATTCTTTGAGGTCTGGGAACTTTGAACCAAAAGG
AAGAACTTTTAAGGCTAAATCACTTCAGGTCCTCAATGATTATAATCAAACCTACAGCCCTTCG
CATGACAACAAATGTTATTAATCATTGAGATGACGGATTGTTATCGATTGCCAAAAACTGTTAT
GAAGCTTCCTTGTGTGTTGTATCACGAAAATCAACTACCTTTGGTAATAGCAGGAAAGAACTCC
CTGATGCTATCCTGTTGTAGAACCAGAACCACCAACTGACCAACCATAAAATGCATAGACTTGA
TATCGCCCATGCATTTTCATTGTTCACAAATTAAAAGCCAGTGACATGACATGCAAACAAGCAG
CAGTAATAATCATTGACCAAGCAGTAGAAGCGCAGCACTAACATTACAAGCCTGGTTCATCATC
CCTGCAGAGATTGCCAACCGTTGGTTTTGATCTCCTTTATGACCATCAAAGAAATCCCATCATT
CCATGGCTGCCTGCAAGCAACAACCACAATCACTCAATTCATCCAGGCATCCAGCAATGTGAAA
CAGTCATGGTTCACAATAAGAGACAGACAACAATAATATAGAACTACTCACCACCATGGAACAG
GGCAGATGCTTGCCTCCATTTCCCATTGGAGAAGACAGCACCGGCGCAGGAGAAGGAATCCCAT
TCATGAAATGCAGA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021