Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G17420_circ_g.6 |
ID in PlantcircBase | ath_circ_003079 |
Alias | Chr1:5979189|5979550 |
Organism | Arabidpsis thaliana |
Position | chr1: 5979189-5979550 JBrowse» |
Reference genome | TAIR10.38 |
Type | ei-circRNA |
Identification method | CIRCexplorer; CIRI |
Parent gene | AT1G17420 |
Parent gene annotation |
Lipoxygenase 3, chloroplastic |
Parent gene strand | + |
Alternative splicing | AT1G17420_circ_g.5 |
Support reads | 3 |
Tissues | seedling |
Exon boundary | Yes-No |
Splicing signals | GA-CG |
Number of exons covered | AT1G17420.1:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.125706031 |
Functional Information | |
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Coding potential | NA |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to methyl jasmonate |
Other Information | |
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References | Zhang et al., 2020 |