Detail information of AT2G04700_circ_g.1


General Information
CircRNA Name AT2G04700_circ_g.1
ID in PlantcircBase ath_circ_012807
Alias 2:1647149-1647479
Organism Arabidpsis thaliana
Position chr2: 1647149-1647479  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G04700
Parent gene annotation Ferredoxin-thioredoxin reductase, catalytic chain
Parent gene strand +
Alternative splicing AT2G04700_circ_g.2 AT2G04700_circ_g.3
Support reads 1/1
Tissues seedling;leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G04700.2:2
AT2G04700.1:2
AT2G04700.3:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTTAGTGAATGTAAACATCTTGAGGTTTAATGCTTAACTTTGTGAGCAGGGTTTGGCTGAGCA
TAAAGATTCATATGGTGCACCGCTTTGCCCTTGCAGcggaaccgtcggagaaatcagtagagat
tatgaggaaattctccgagcaatatgctcgtcgctctgggacttacttctgtgttgataaagga
gttacttc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 163
Transcript exons: 1647149-1647261,1647430-1647479
CGGAACCGTCGGAGAAATCAGTAGAGATTATGAGGAAATTCTCCGAGCAATATGCTCGTCGCTC
TGGGACTTACTTCTGTGTTGATAAAGGAGTTACTTCAGTCGTTATTAAGGGTTTGGCTGAGCAT
AAAGATTCATATGGTGCACCGCTTTGCCCTTGCAG

Genomic sequence CGGAACCGTCGGAGAAATCAGTAGAGATTATGAGGAAATTCTCCGAGCAATATGCTCGTCGCTC
TGGGACTTACTTCTGTGTTGATAAAGGAGTTACTTCAGTCGTTATTAAGGTACTCTTGATTTCA
ATCGGAGCTTATTGAAATTTCAGATGAACTTGTGTTGATATGAAGATTGTGATCAACTGCTTAA
CTATTGAAGTGGCTTGTGTCTTTCTACTTGTAGATTATGAGTTAGTGAATGTAAACATCTTGAG
GTTTAATGCTTAACTTTGTGAGCAGGGTTTGGCTGAGCATAAAGATTCATATGGTGCACCGCTT
TGCCCTTGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.197445871
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020