Detail information of AT2G04700_circ_g.2


General Information
CircRNA Name AT2G04700_circ_g.2
ID in PlantcircBase ath_circ_012808
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1647149-1647624  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene AT2G04700
Parent gene annotation Ferredoxin-thioredoxin reductase, catalytic chain
Parent gene strand +
Alternative splicing AT2G04700_circ_g.1 AT2G04700_circ_g.3
Support reads 2
Tissues seedlings
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G04700.1:3
AT2G04700.3:3
AT2G04700.2:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAGTTTGATCCTTTGTTGTTGATGTAGACACTATGATGATAAAGCTGCTGAGGTTGGACAAGG
CTTTTGGAATTGTCCGTGTGTTCCAATGAGAGAGAGcggaaccgtcggagaaatcagtagagat
tatgaggaaattctccgagcaatatgctcgtcgctctgggacttacttctgtgttgataaagga
gttacttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGGAACCGTCGGAGAAATCAGTAGAGATTATGAGGAAATTCTCCGAGCAATATGCTCGTCGCTC
TGGGACTTACTTCTGTGTTGATAAAGGAGTTACTTCAGTCGTTATTAAGGTACTCTTGATTTCA
ATCGGAGCTTATTGAAATTTCAGATGAACTTGTGTTGATATGAAGATTGTGATCAACTGCTTAA
CTATTGAAGTGGCTTGTGTCTTTCTACTTGTAGATTATGAGTTAGTGAATGTAAACATCTTGAG
GTTTAATGCTTAACTTTGTGAGCAGGGTTTGGCTGAGCATAAAGATTCATATGGTGCACCGCTT
TGCCCTTGCAGGTGATTTGCTTCTTCCGAGCAATCTTGAACTATCTATGTATTCGTAAAGTTTG
ATCCTTTGTTGTTGATGTAGACACTATGATGATAAAGCTGCTGAGGTTGGACAAGGCTTTTGGA
ATTGTCCGTGTGTTCCAATGAGAGAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.146628239
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Pan et al., 2017