Detail information of Os11g0573000_circ_g.3


General Information
CircRNA Name Os11g0573000_circ_g.3
ID in PlantcircBase osa_circ_009665
Alias NA
Organism Oryza sativa
Position chr11: 21511037-21511142  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os11g0573000
Parent gene annotation Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family pr
otein. (Os11t0573000-01);Similar to Ubiquitin carboxyl-terminal
hydrolase family protein, expressed. (Os11t0573000-02)
Parent gene strand -
Alternative splicing Os11g0573000_circ_g.8 Os11g0573000_circ_igg.1 Os11g0573000_circ_g.2
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CT-GG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCTTAAAGCCATTAAAGTAAGTTGTGAATGACATACTCATAAAAAACACTACtttccctaact
accataatgaactattaggacgtgtgatggagaaattaattg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTTCCCTAACTACCATAATGAACTATTAGGACGTGTGATGGAGAAATTAATTGATCTTAAAGCC
ATTAAAGTAAGTTGTGAATGACATACTCATAAAAAACACTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.132861635
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017