Detail information of Os11g0573000_circ_g.8


General Information
CircRNA Name Os11g0573000_circ_g.8
ID in PlantcircBase osa_circ_009662
Alias NA
Organism Oryza sativa
Position chr11: 21510492-21511252  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0573000
Parent gene annotation Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family pr
otein. (Os11t0573000-01);Similar to Ubiquitin carboxyl-terminal
hydrolase family protein, expressed. (Os11t0573000-02)
Parent gene strand -
Alternative splicing Os11g0573000_circ_igg.1 Os11g0573000_circ_g.2 Os11g0573000_circ_g.3
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0573000-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATAAAGGTTTCTTATACTTCTATCTGCATCTGGAGCAAGATATTTTCCATCATCTCTATCCAA
ATCAAGTTGCAAAGGGAATTCATAGCGGTCATTAATcattgatctgatagcgttggtcgaatga
aggcatagtagtgaccgccatgtactcctccactatgaacaagaacactgaataaaagcagcag
tgaaacat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATTGATCTGATAGCGTTGGTCGAATGAAGGCATAGTAGTGACCGCCATGTACTCCTCCACTAT
GAACAAGAACACTGAATAAAAGCAGCAGTGAAACATAGTGAGAAAAAGATGTGGAAAGGAGGAA
AAAAGGCACCTATTGGAGCACCACTGTTACACTGAAAATGGTACCTAAGAAACCATTACACAAA
AATAACAAATGGTATTTGCTTGATCCCAGGTCTCACCAAAACTGAATTTTCTAAGATACATAAA
ACCCTGTTATTCCATAACTCTAAAACCAATATGGAATACAATGACTGCTAAGAGAATGGCAAGT
GATGTGGAATTCTCAGGAATTGACTCAGTCATTATGCATGAAGATTCGTGCAGGTATATACTTG
TATAGCGCATTATATCAGCCCATTTTATACTATCAACCAATTCTTCCTCCAAGTTTTTTGTCCA
CAGACAGACAGCAGCTAGTAGTCTACCCCCATGCTCATACATAGCATGTAGATAAAAGAAACAG
GTATTATTACTAACGAACCCACTGATACTTTGGTTTCCCTAACTACCATAATGAACTATTAGGA
CGTGTGATGGAGAAATTAATTGATCTTAAAGCCATTAAAGTAAGTTGTGAATGACATACTCATA
AAAAACACTACCTGTGAAGAGCATAAAGGTTTCTTATACTTCTATCTGCATCTGGAGCAAGATA
TTTTCCATCATCTCTATCCAAATCAAGTTGCAAAGGGAATTCATAGCGGTCATTAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.14623329
Functional Information
Coding potential Y
Potential coding position 21510540-21510494(+)
21511157-21511250(-)
21510496-21510493(-)
Potential amino acid sequence MYSSTMNKNTVKSIKVSYTSICIWSKIFSIISIQIKLQREFIAVINH*(+)
MLFTVFLFIVEEYMAVTTMPSFDQRYQIND*(-)
MINDRYEFPLQLDLDRDDGKYLAPDADRSIRNLYALHSVLVHSGGVHGGHYYAFIRPTLSDQ*(
-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017