Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d015948_circ_g.2 |
ID in PlantcircBase | zma_circ_002053 |
Alias | circ2152 |
Organism | Zea mays |
Position | chr5: 133570175-133574715 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | CIRCexplor2 |
Parent gene | Zm00001d015948 |
Parent gene annotation |
ATP-dependent Clp protease ATP-binding subunit clpX |
Parent gene strand | - |
Alternative splicing | Zm00001d015948_circ_g.1 Zm00001d015948_circ_g.3 |
Support reads | 6 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | CT-TA |
Number of exons covered | Zm00001d015948_T002:10 Zm00001d015948_T012:8 Zm00001d015948_T001:10 Zm00001d015948_T008:9 Zm00001d015948_T014:9 Zm00001d015948_T007:4 Zm00001d015948_T013:7 Zm00001d015948_T005:9 Zm00001d015948_T003:10 Zm00001d015948_T006:9 Zm00001d015948_T011:8 Zm00001d015948_T009:10 Zm00001d015948_T010:9 Zm00001d015948_T004:10 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.06301701 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |