Detail information of Zm00001d015948_circ_g.2


General Information
CircRNA Name Zm00001d015948_circ_g.2
ID in PlantcircBase zma_circ_002053
Alias circ2152
Organism Zea mays
Position chr5: 133570175-133574715  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d015948
Parent gene annotation ATP-dependent Clp protease ATP-binding subunit clpX
Parent gene strand -
Alternative splicing Zm00001d015948_circ_g.1 Zm00001d015948_circ_g.3
Support reads 6
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d015948_T002:10
Zm00001d015948_T012:8
Zm00001d015948_T001:10
Zm00001d015948_T008:9
Zm00001d015948_T014:9
Zm00001d015948_T007:4
Zm00001d015948_T013:7
Zm00001d015948_T005:9
Zm00001d015948_T003:10
Zm00001d015948_T006:9
Zm00001d015948_T011:8
Zm00001d015948_T009:10
Zm00001d015948_T010:9
Zm00001d015948_T004:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAATGGCTAAAATGCAAGGTCCATATAATATAGAGAGTTGAGAGGTACCGCTAGGAGCTTATA
CAAAATAGATTCAACATCCTCACCAACATATCCAGCcctcatacatagcttctgtcaatatact
ttctaatatggaccttaaaccacgagccccagtattcttcgatattgctcttttggcaataagc
cgtaaagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCATACATAGCTTCTGTCAATATACTTTCTAATATGGACCTTAAACCACGAGCCCCAGTATT
CTTCGATATTGCTCTTTTGGCAATAAGCCGTAAAGCCTCCTCCGTAAAATGCAATTTGACCTAA
GTAACAATGCAAGTTGCAAGATAAATACATGAACATTAAGGGGACAACAAAATTCCAAACAAAT
TCTTACGTCATTCATTTCGAACAACTTGGTATACTGCCTGCCAAGGGCATTCTTTGGCTCTGTG
AGAACCTACAGAGTGGAGCACAGCTGTGTTAGCTTTGAAGGTAATATAAGTTGCGTACCTAGGA
ACAAAGAGTGTTCAATAAATATATGAAGATAACATTTGCATTTTGCAAAATTTATGATATGCGG
AAGCAAGGCTTGAAAGATGATGGGGCGTAATGGATAGTGATTGTACAGATTTTTTTAGATGATC
TTTCCTGATAATAAGACAACCTAGCCCTAACAAATAAAGTAAAAAAAGTAAGCAATCGCTAGGA
CTACAGGAGACCCCTATCAGTACAGTAGTCATTTTTGGTATAATTGCTAACACCAGCCTGTAAT
CACCGAGGTCTGTAACCACTAAACTGAAGCTGAGCCTGTTACATGCAAGTGAAGGTGTACATGA
ACAATAAAGTTACCTCAACAAGCTGATCTTCGCTGAGGGAGGATAGACCAACAAGAATTGGAAA
TCTACCAACAAACTCTGGGATTAGTCCATACGCAATGAGATCGCCACTTTCAACCTGCAGAAAT
AGTCCAAATAATTAAAAAAGAAAAAAAAACTATAAAGACTCTAGCATGAAGGTGAAGCAAAGCA
GAAGACAGTGATACTATTTGGAAAAGAGCCAACAGCCAACAGAGAATGCTACACATAACATAAG
TCATTTTCTAATTTTTACTCACTGATTTCAGTAGCGATGATGTAATCTCAGCATTTATGACACC
ACCAGATCGCATATTTGAACGAACCTGCGCTCGGAAACCAATTGAAGAATCATGTCTCCTAAGA
AAGAAAACAGGGCAAACCTTGGTTATTAAAAGCTTGTGATATCAGAAGTCCAAAACATAAAACA
CAAAGACTGTCCACAACCTTTCAGAAATAGTTTTCTCCAAGTCCACAAAAGCACCACCGCAGAT
GAAGAGAATGTTTTTGGTATCAATCTGCGATGCAAGACAAATGAACATCAAAATCTGCATATTT
TTTCTTGTGGGTCTAGCTATTGACTGAACACTGATCAAAACATGTGCAAGTACGAATAAAGAAG
CCTTCTGGCTCGCTTGTATGTTAGGATAAAAAATTGGTTCTTATTTAACATGTTACAAGTAAAA
GGGATATGGAAAAAAAAACTATTCAAATACATCTCTTCTTTTCTAAAGTTGACGAGGAATCATA
AGCATTGACTCCAATGTTATCACTTTTTCAAATAGCGGTGCTAGGGTAAGACCACCCGAGGTCC
TTTCTTCTGCTACTGAAGGTACGATCACTAATGCGGTGATTAGCGCCACTAAATGCCATACTGG
ATGTTGGAGTTTAGTGCTGGTAATGGCATGGCTGATTGCAGCATGTGCGTGCTGCAGCAGCAAT
GTGACTGCGCTGGTAGCAAAAGCAGCTGCTGGCCAGGCCAGCAGACCATGCGAGCGTGGGTGTG
GGACAGCAGTTGCATGCCGAAGTTGTATCGATGTAGTGGCCTGGGAGAAAAGCAGTAGACAACT
AAGGAGTAAGGAGTAAAGAGGCTTGCTGCTACAGACCAGGTACAAATAGGCCCACGTGCATGCA
TGATGTGAGTTGTGACGAGTTGATTCAATTTTGTTTAATTCCACTAAATTGTTATTGCCACTAT
TAGCTCATGATGGGCCTTTTAGCATCTTGAGGTAGCGACCCGCTAAATGGTTTACCCCACTATT
TAAAATGTCAAATGTTATAGATGAAAAAGAACACGGAAGATACAAAACAAAACCTCGGACACAT
GCTACTATCAATATCAAAAGATATAATAGCAGTATTACTGACAATTTCTCAAACTCTATTGTCC
TCATGTGTTTAATTGTTTCCTCTGGCTTGCGTTTTTCAAATTCTGTTAATACACTAAATAACGT
ATTAACATTTCAAAGTTTACACATCACAGAGGGTTACAAGAACAACACCAGAAATATTTTTGCA
TTAGAATAACAAAACTATTGTTTTCAGTTTTTCACTGTTCAGCAAGAGAACATTAATCCTCCTA
GTATGTGCAGGGAACATAAACAGTGTACTAGTACTACTATGATTTCTGATAACTATCAAAGTGC
AGCTTGCATGGAAGGATACCTGGATATTGTCACCCCTTGGGTGCCTTCTGGCCCCTTTCTCAGG
AACACTAACAACCTATCTTGACAGCATAAACATAACTTGTAAGAAGATAAATAAGAAAATATTT
GCCATGCATCTTACATATATTGCATTACAGAACATAGAGGGCACTCACAAATTGGACCAAAAAG
ACACAAACTTAATTACTTAATAATTACCGAAAAGAACAAAAAGAGAATTTGAAGTTCTGAACAG
CTTATTTGCTACTAAAACATGGAACTGAATAGAGCTGTTGCGTGCTAATAAGGATGCTTTCTAA
GAGCAACTCCAATAGTTATGTAAATGTTAGCTCTCTAAATCATAGATTTAAGAAGTTGCTAAAT
GGCCATTGGAGTAAAAAAATATGAGTTCTCCAATAGTTCTCTAAATATAGGTTGTAATTTTGTT
TTGTATCTATCCACATAAAAAATAAGTCACAAAAACTACATAATGCAGTCAATATTTTTGTTTA
GGGAGTTGTTAAATGATTGCCAAATGTAGAGAGAAAATGAGGTTAGATGACAAGTTGTTAAATT
TAGGAAGTTCATTTAGAGAACTGTTGGAGAATAATTTTTATGTTAACTACCTAAATTATTGATT
TAGGAAGTCTTTTAGAGAACTACTGGAGTTGCTCTAAGATTCCTTAAATACAATACCATAATTC
CATCAGTTAATATTAATAGTGACCCAGTCTATGCAGTTCATTTTGCATGCTCAGAAACAAATCG
GTTGTTTGCTGCAAATAAAGTGTTGTGTACAAGTTATAAATATCTATATACCAGAACCCCTTAC
ATGCTAGAAAATAGGATTTTAGTGCATTATCAATGGTATTTGTACTTTGTACTATACAGCTTAA
ACCTCAACAGAGGATTAAAAGAAAACAATTGGTTTTGGAACAGCATACTAGCACAGCCTATGCC
AGATCACATATCACTGCCAAAAACAAATCAATCAAATCAAATTTGTTACAGACTATTTTTAAAC
TATGGCTATACCGCTATATAGTCTACAATGGCAATCCATTGTAAATTGACTCCAGACAACTATG
AAAATCTCTCCAAAAAAATAAAAAGTGGAAAACTGCTAAATAATCACTAGGTTTGTTTCTTCTA
CAGGAGCTCCCCGAGCATAAAAATTATTAATGGAAAGTTCAAACTTCAAAGGTTGACAGACAGA
CCGTTCCTTCAAGCATTTTCAACAATGCTTGTTGCACACCTTCACCTGAAACATCTCTGCTAAG
ATTGATGCTTTCAGCCTGAAAAGCATTGCAATCAGAAATATAAAAGGAAAAAAAGGATAAAATG
TATGACAGGTGCCTAAATTAACTTATGAACAAACCTTCTTTGTTATTTTATCAACTTCATCAAT
ATAGACGATTCCCTGCTGGGCAGCAGCTACGTCGAAATCAGCAGCCTAGGGTGCAAAAGAGAAA
TGTATAAAGATGAGTAGAAGCATCGGTAAACTAAGCGGAGTGCGATAAACATATTTCACTTCTA
TTTTTGTTTGTATACTTCACTCTGCCTGGCTTGGAGACAAATCCAAAGTTTATGCTTTATATTA
TCTTTTACGATCTTCACATACTTCATATGCCATGTCCCATCCCATGTTCATGACAGGATAAACA
ACACTGGAGGATGGCTGAGCGGCAGTGGCTGCTAGGGAATGAATATAAGAGAACTAGATTATTA
ATGTGCTTACTTTGAGAGTTAGATATCTCTTCACATAGAGCTGTTTATACTTGACTCCTAAGGA
AGGATCTAATCTACTCCATGTCCTAACAAACTATATCCAGAATATAGCAAACTCAACTCTAATC
ATACCTTCACATGAGGAAGGGAATTGACCATCTCAGTGCCCATTCCCCGGCAGGGCTAGTGCAT
AACAGCACGAGTTTGGCTTCGCAATCACAGACACTGTGCAACCTAAAATAAGTGCTTTTACTAT
TTTTTCCCTTGAGAACACCACCTCCAGTTTTGAAATTTTGGTACTTGCTAAAATCTTCTAGAGC
CCAATTATTATCATGAAAAAAGGTCTCAAGTAAAACAGGGGGTGGGGGAGGGGAGAAGGTTCTC
CAGTTCAGGTTAGAATTACAATGCAGAAATGGCTAAAATGCAAGGTCCATATAATATAGAGAGT
TGAGAGGTACCGCTAGGAGCTTATACAAAATAGATTCAACATCCTCACCAACATATCCAGC
Conservation Information
Conserved circRNAs NA
PMCS 0.06301701
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b