Plant Circular RNA Database

Detail information of Zm00001d015948_circ_g.3

			
						 General Information
					
						CircRNA Name
						Zm00001d015948_circ_g.3
					
						ID in PlantcircBase
						zma_circ_008662
					
						Alias
						Zm05circ00083, GRMZM5G861603_C1
					
						Organism
						
							Zea mays						
					
						Position
						
							chr5: 133570176-133574715  JBrowse»						
					
						Reference genome
						
							AGPv4.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRI2
					
						Parent gene
						
							Zm00001d015948						
					
						Parent gene annotation
						
							ATP-dependent Clp protease ATP-binding subunit clpX  
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Zm00001d015948_circ_g.1 Zm00001d015948_circ_g.2 						
					
						Support reads
						NA
					
						Tissues
						leaf, endosperm
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Zm00001d015948_T013:7
Zm00001d015948_T012:8
Zm00001d015948_T002:10
Zm00001d015948_T004:10
Zm00001d015948_T005:9
Zm00001d015948_T007:4
Zm00001d015948_T008:9
Zm00001d015948_T014:9
Zm00001d015948_T011:8
Zm00001d015948_T003:10
Zm00001d015948_T006:9
Zm00001d015948_T009:10
Zm00001d015948_T001:10
Zm00001d015948_T010:9

General Information
CircRNA Name	Zm00001d015948_circ_g.3
ID in PlantcircBase	zma_circ_008662
Alias	Zm05circ00083, GRMZM5G861603_C1
Organism	Zea mays
Position	chr5: 133570176-133574715 JBrowse»
Reference genome	AGPv4.38
Type	u-circRNA
Identification method	CIRI2
Parent gene	Zm00001d015948
Parent gene annotation	ATP-dependent Clp protease ATP-binding subunit clpX
Parent gene strand	-
Alternative splicing	Zm00001d015948_circ_g.1 Zm00001d015948_circ_g.2
Support reads	NA
Tissues	leaf, endosperm
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Zm00001d015948_T013:7 Zm00001d015948_T012:8 Zm00001d015948_T002:10 Zm00001d015948_T004:10 Zm00001d015948_T005:9 Zm00001d015948_T007:4 Zm00001d015948_T008:9 Zm00001d015948_T014:9 Zm00001d015948_T011:8 Zm00001d015948_T003:10 Zm00001d015948_T006:9 Zm00001d015948_T009:10 Zm00001d015948_T001:10 Zm00001d015948_T010:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GAAATGGCTAAAATGCAAGGTCCATATAATATAGAGAGTTGAGAGGTACCGCTAGGAGCTTATA
CAAAATAGATTCAACATCCTCACCAACATATCCAGCctcatacatagcttctgtcaatatactt
tctaatatggaccttaaaccacgagccccagtattcttcgatattgctcttttggcaataagcc
gtaaagcc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTCATACATAGCTTCTGTCAATATACTTTCTAATATGGACCTTAAACCACGAGCCCCAGTATTC
TTCGATATTGCTCTTTTGGCAATAAGCCGTAAAGCCTCCTCCGTAAAATGCAATTTGACCTAAG
TAACAATGCAAGTTGCAAGATAAATACATGAACATTAAGGGGACAACAAAATTCCAAACAAATT
CTTACGTCATTCATTTCGAACAACTTGGTATACTGCCTGCCAAGGGCATTCTTTGGCTCTGTGA
GAACCTACAGAGTGGAGCACAGCTGTGTTAGCTTTGAAGGTAATATAAGTTGCGTACCTAGGAA
CAAAGAGTGTTCAATAAATATATGAAGATAACATTTGCATTTTGCAAAATTTATGATATGCGGA
AGCAAGGCTTGAAAGATGATGGGGCGTAATGGATAGTGATTGTACAGATTTTTTTAGATGATCT
TTCCTGATAATAAGACAACCTAGCCCTAACAAATAAAGTAAAAAAAGTAAGCAATCGCTAGGAC
TACAGGAGACCCCTATCAGTACAGTAGTCATTTTTGGTATAATTGCTAACACCAGCCTGTAATC
ACCGAGGTCTGTAACCACTAAACTGAAGCTGAGCCTGTTACATGCAAGTGAAGGTGTACATGAA
CAATAAAGTTACCTCAACAAGCTGATCTTCGCTGAGGGAGGATAGACCAACAAGAATTGGAAAT
CTACCAACAAACTCTGGGATTAGTCCATACGCAATGAGATCGCCACTTTCAACCTGCAGAAATA
GTCCAAATAATTAAAAAAGAAAAAAAAACTATAAAGACTCTAGCATGAAGGTGAAGCAAAGCAG
AAGACAGTGATACTATTTGGAAAAGAGCCAACAGCCAACAGAGAATGCTACACATAACATAAGT
CATTTTCTAATTTTTACTCACTGATTTCAGTAGCGATGATGTAATCTCAGCATTTATGACACCA
CCAGATCGCATATTTGAACGAACCTGCGCTCGGAAACCAATTGAAGAATCATGTCTCCTAAGAA
AGAAAACAGGGCAAACCTTGGTTATTAAAAGCTTGTGATATCAGAAGTCCAAAACATAAAACAC
AAAGACTGTCCACAACCTTTCAGAAATAGTTTTCTCCAAGTCCACAAAAGCACCACCGCAGATG
AAGAGAATGTTTTTGGTATCAATCTGCGATGCAAGACAAATGAACATCAAAATCTGCATATTTT
TTCTTGTGGGTCTAGCTATTGACTGAACACTGATCAAAACATGTGCAAGTACGAATAAAGAAGC
CTTCTGGCTCGCTTGTATGTTAGGATAAAAAATTGGTTCTTATTTAACATGTTACAAGTAAAAG
GGATATGGAAAAAAAAACTATTCAAATACATCTCTTCTTTTCTAAAGTTGACGAGGAATCATAA
GCATTGACTCCAATGTTATCACTTTTTCAAATAGCGGTGCTAGGGTAAGACCACCCGAGGTCCT
TTCTTCTGCTACTGAAGGTACGATCACTAATGCGGTGATTAGCGCCACTAAATGCCATACTGGA
TGTTGGAGTTTAGTGCTGGTAATGGCATGGCTGATTGCAGCATGTGCGTGCTGCAGCAGCAATG
TGACTGCGCTGGTAGCAAAAGCAGCTGCTGGCCAGGCCAGCAGACCATGCGAGCGTGGGTGTGG
GACAGCAGTTGCATGCCGAAGTTGTATCGATGTAGTGGCCTGGGAGAAAAGCAGTAGACAACTA
AGGAGTAAGGAGTAAAGAGGCTTGCTGCTACAGACCAGGTACAAATAGGCCCACGTGCATGCAT
GATGTGAGTTGTGACGAGTTGATTCAATTTTGTTTAATTCCACTAAATTGTTATTGCCACTATT
AGCTCATGATGGGCCTTTTAGCATCTTGAGGTAGCGACCCGCTAAATGGTTTACCCCACTATTT
AAAATGTCAAATGTTATAGATGAAAAAGAACACGGAAGATACAAAACAAAACCTCGGACACATG
CTACTATCAATATCAAAAGATATAATAGCAGTATTACTGACAATTTCTCAAACTCTATTGTCCT
CATGTGTTTAATTGTTTCCTCTGGCTTGCGTTTTTCAAATTCTGTTAATACACTAAATAACGTA
TTAACATTTCAAAGTTTACACATCACAGAGGGTTACAAGAACAACACCAGAAATATTTTTGCAT
TAGAATAACAAAACTATTGTTTTCAGTTTTTCACTGTTCAGCAAGAGAACATTAATCCTCCTAG
TATGTGCAGGGAACATAAACAGTGTACTAGTACTACTATGATTTCTGATAACTATCAAAGTGCA
GCTTGCATGGAAGGATACCTGGATATTGTCACCCCTTGGGTGCCTTCTGGCCCCTTTCTCAGGA
ACACTAACAACCTATCTTGACAGCATAAACATAACTTGTAAGAAGATAAATAAGAAAATATTTG
CCATGCATCTTACATATATTGCATTACAGAACATAGAGGGCACTCACAAATTGGACCAAAAAGA
CACAAACTTAATTACTTAATAATTACCGAAAAGAACAAAAAGAGAATTTGAAGTTCTGAACAGC
TTATTTGCTACTAAAACATGGAACTGAATAGAGCTGTTGCGTGCTAATAAGGATGCTTTCTAAG
AGCAACTCCAATAGTTATGTAAATGTTAGCTCTCTAAATCATAGATTTAAGAAGTTGCTAAATG
GCCATTGGAGTAAAAAAATATGAGTTCTCCAATAGTTCTCTAAATATAGGTTGTAATTTTGTTT
TGTATCTATCCACATAAAAAATAAGTCACAAAAACTACATAATGCAGTCAATATTTTTGTTTAG
GGAGTTGTTAAATGATTGCCAAATGTAGAGAGAAAATGAGGTTAGATGACAAGTTGTTAAATTT
AGGAAGTTCATTTAGAGAACTGTTGGAGAATAATTTTTATGTTAACTACCTAAATTATTGATTT
AGGAAGTCTTTTAGAGAACTACTGGAGTTGCTCTAAGATTCCTTAAATACAATACCATAATTCC
ATCAGTTAATATTAATAGTGACCCAGTCTATGCAGTTCATTTTGCATGCTCAGAAACAAATCGG
TTGTTTGCTGCAAATAAAGTGTTGTGTACAAGTTATAAATATCTATATACCAGAACCCCTTACA
TGCTAGAAAATAGGATTTTAGTGCATTATCAATGGTATTTGTACTTTGTACTATACAGCTTAAA
CCTCAACAGAGGATTAAAAGAAAACAATTGGTTTTGGAACAGCATACTAGCACAGCCTATGCCA
GATCACATATCACTGCCAAAAACAAATCAATCAAATCAAATTTGTTACAGACTATTTTTAAACT
ATGGCTATACCGCTATATAGTCTACAATGGCAATCCATTGTAAATTGACTCCAGACAACTATGA
AAATCTCTCCAAAAAAATAAAAAGTGGAAAACTGCTAAATAATCACTAGGTTTGTTTCTTCTAC
AGGAGCTCCCCGAGCATAAAAATTATTAATGGAAAGTTCAAACTTCAAAGGTTGACAGACAGAC
CGTTCCTTCAAGCATTTTCAACAATGCTTGTTGCACACCTTCACCTGAAACATCTCTGCTAAGA
TTGATGCTTTCAGCCTGAAAAGCATTGCAATCAGAAATATAAAAGGAAAAAAAGGATAAAATGT
ATGACAGGTGCCTAAATTAACTTATGAACAAACCTTCTTTGTTATTTTATCAACTTCATCAATA
TAGACGATTCCCTGCTGGGCAGCAGCTACGTCGAAATCAGCAGCCTAGGGTGCAAAAGAGAAAT
GTATAAAGATGAGTAGAAGCATCGGTAAACTAAGCGGAGTGCGATAAACATATTTCACTTCTAT
TTTTGTTTGTATACTTCACTCTGCCTGGCTTGGAGACAAATCCAAAGTTTATGCTTTATATTAT
CTTTTACGATCTTCACATACTTCATATGCCATGTCCCATCCCATGTTCATGACAGGATAAACAA
CACTGGAGGATGGCTGAGCGGCAGTGGCTGCTAGGGAATGAATATAAGAGAACTAGATTATTAA
TGTGCTTACTTTGAGAGTTAGATATCTCTTCACATAGAGCTGTTTATACTTGACTCCTAAGGAA
GGATCTAATCTACTCCATGTCCTAACAAACTATATCCAGAATATAGCAAACTCAACTCTAATCA
TACCTTCACATGAGGAAGGGAATTGACCATCTCAGTGCCCATTCCCCGGCAGGGCTAGTGCATA
ACAGCACGAGTTTGGCTTCGCAATCACAGACACTGTGCAACCTAAAATAAGTGCTTTTACTATT
TTTTCCCTTGAGAACACCACCTCCAGTTTTGAAATTTTGGTACTTGCTAAAATCTTCTAGAGCC
CAATTATTATCATGAAAAAAGGTCTCAAGTAAAACAGGGGGTGGGGGAGGGGAGAAGGTTCTCC
AGTTCAGGTTAGAATTACAATGCAGAAATGGCTAAAATGCAAGGTCCATATAATATAGAGAGTT
GAGAGGTACCGCTAGGAGCTTATACAAAATAGATTCAACATCCTCACCAACATATCCAGC
						
					

			
		

Sequences
Splice junction sequence	GAAATGGCTAAAATGCAAGGTCCATATAATATAGAGAGTTGAGAGGTACCGCTAGGAGCTTATA CAAAATAGATTCAACATCCTCACCAACATATCCAGCctcatacatagcttctgtcaatatactt tctaatatggaccttaaaccacgagccccagtattcttcgatattgctcttttggcaataagcc gtaaagcc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTCATACATAGCTTCTGTCAATATACTTTCTAATATGGACCTTAAACCACGAGCCCCAGTATTC TTCGATATTGCTCTTTTGGCAATAAGCCGTAAAGCCTCCTCCGTAAAATGCAATTTGACCTAAG TAACAATGCAAGTTGCAAGATAAATACATGAACATTAAGGGGACAACAAAATTCCAAACAAATT CTTACGTCATTCATTTCGAACAACTTGGTATACTGCCTGCCAAGGGCATTCTTTGGCTCTGTGA GAACCTACAGAGTGGAGCACAGCTGTGTTAGCTTTGAAGGTAATATAAGTTGCGTACCTAGGAA CAAAGAGTGTTCAATAAATATATGAAGATAACATTTGCATTTTGCAAAATTTATGATATGCGGA AGCAAGGCTTGAAAGATGATGGGGCGTAATGGATAGTGATTGTACAGATTTTTTTAGATGATCT TTCCTGATAATAAGACAACCTAGCCCTAACAAATAAAGTAAAAAAAGTAAGCAATCGCTAGGAC TACAGGAGACCCCTATCAGTACAGTAGTCATTTTTGGTATAATTGCTAACACCAGCCTGTAATC ACCGAGGTCTGTAACCACTAAACTGAAGCTGAGCCTGTTACATGCAAGTGAAGGTGTACATGAA CAATAAAGTTACCTCAACAAGCTGATCTTCGCTGAGGGAGGATAGACCAACAAGAATTGGAAAT CTACCAACAAACTCTGGGATTAGTCCATACGCAATGAGATCGCCACTTTCAACCTGCAGAAATA GTCCAAATAATTAAAAAAGAAAAAAAAACTATAAAGACTCTAGCATGAAGGTGAAGCAAAGCAG AAGACAGTGATACTATTTGGAAAAGAGCCAACAGCCAACAGAGAATGCTACACATAACATAAGT CATTTTCTAATTTTTACTCACTGATTTCAGTAGCGATGATGTAATCTCAGCATTTATGACACCA CCAGATCGCATATTTGAACGAACCTGCGCTCGGAAACCAATTGAAGAATCATGTCTCCTAAGAA AGAAAACAGGGCAAACCTTGGTTATTAAAAGCTTGTGATATCAGAAGTCCAAAACATAAAACAC AAAGACTGTCCACAACCTTTCAGAAATAGTTTTCTCCAAGTCCACAAAAGCACCACCGCAGATG AAGAGAATGTTTTTGGTATCAATCTGCGATGCAAGACAAATGAACATCAAAATCTGCATATTTT TTCTTGTGGGTCTAGCTATTGACTGAACACTGATCAAAACATGTGCAAGTACGAATAAAGAAGC CTTCTGGCTCGCTTGTATGTTAGGATAAAAAATTGGTTCTTATTTAACATGTTACAAGTAAAAG GGATATGGAAAAAAAAACTATTCAAATACATCTCTTCTTTTCTAAAGTTGACGAGGAATCATAA GCATTGACTCCAATGTTATCACTTTTTCAAATAGCGGTGCTAGGGTAAGACCACCCGAGGTCCT TTCTTCTGCTACTGAAGGTACGATCACTAATGCGGTGATTAGCGCCACTAAATGCCATACTGGA TGTTGGAGTTTAGTGCTGGTAATGGCATGGCTGATTGCAGCATGTGCGTGCTGCAGCAGCAATG TGACTGCGCTGGTAGCAAAAGCAGCTGCTGGCCAGGCCAGCAGACCATGCGAGCGTGGGTGTGG GACAGCAGTTGCATGCCGAAGTTGTATCGATGTAGTGGCCTGGGAGAAAAGCAGTAGACAACTA AGGAGTAAGGAGTAAAGAGGCTTGCTGCTACAGACCAGGTACAAATAGGCCCACGTGCATGCAT GATGTGAGTTGTGACGAGTTGATTCAATTTTGTTTAATTCCACTAAATTGTTATTGCCACTATT AGCTCATGATGGGCCTTTTAGCATCTTGAGGTAGCGACCCGCTAAATGGTTTACCCCACTATTT AAAATGTCAAATGTTATAGATGAAAAAGAACACGGAAGATACAAAACAAAACCTCGGACACATG CTACTATCAATATCAAAAGATATAATAGCAGTATTACTGACAATTTCTCAAACTCTATTGTCCT CATGTGTTTAATTGTTTCCTCTGGCTTGCGTTTTTCAAATTCTGTTAATACACTAAATAACGTA TTAACATTTCAAAGTTTACACATCACAGAGGGTTACAAGAACAACACCAGAAATATTTTTGCAT TAGAATAACAAAACTATTGTTTTCAGTTTTTCACTGTTCAGCAAGAGAACATTAATCCTCCTAG TATGTGCAGGGAACATAAACAGTGTACTAGTACTACTATGATTTCTGATAACTATCAAAGTGCA GCTTGCATGGAAGGATACCTGGATATTGTCACCCCTTGGGTGCCTTCTGGCCCCTTTCTCAGGA ACACTAACAACCTATCTTGACAGCATAAACATAACTTGTAAGAAGATAAATAAGAAAATATTTG CCATGCATCTTACATATATTGCATTACAGAACATAGAGGGCACTCACAAATTGGACCAAAAAGA CACAAACTTAATTACTTAATAATTACCGAAAAGAACAAAAAGAGAATTTGAAGTTCTGAACAGC TTATTTGCTACTAAAACATGGAACTGAATAGAGCTGTTGCGTGCTAATAAGGATGCTTTCTAAG AGCAACTCCAATAGTTATGTAAATGTTAGCTCTCTAAATCATAGATTTAAGAAGTTGCTAAATG GCCATTGGAGTAAAAAAATATGAGTTCTCCAATAGTTCTCTAAATATAGGTTGTAATTTTGTTT TGTATCTATCCACATAAAAAATAAGTCACAAAAACTACATAATGCAGTCAATATTTTTGTTTAG GGAGTTGTTAAATGATTGCCAAATGTAGAGAGAAAATGAGGTTAGATGACAAGTTGTTAAATTT AGGAAGTTCATTTAGAGAACTGTTGGAGAATAATTTTTATGTTAACTACCTAAATTATTGATTT AGGAAGTCTTTTAGAGAACTACTGGAGTTGCTCTAAGATTCCTTAAATACAATACCATAATTCC ATCAGTTAATATTAATAGTGACCCAGTCTATGCAGTTCATTTTGCATGCTCAGAAACAAATCGG TTGTTTGCTGCAAATAAAGTGTTGTGTACAAGTTATAAATATCTATATACCAGAACCCCTTACA TGCTAGAAAATAGGATTTTAGTGCATTATCAATGGTATTTGTACTTTGTACTATACAGCTTAAA CCTCAACAGAGGATTAAAAGAAAACAATTGGTTTTGGAACAGCATACTAGCACAGCCTATGCCA GATCACATATCACTGCCAAAAACAAATCAATCAAATCAAATTTGTTACAGACTATTTTTAAACT ATGGCTATACCGCTATATAGTCTACAATGGCAATCCATTGTAAATTGACTCCAGACAACTATGA AAATCTCTCCAAAAAAATAAAAAGTGGAAAACTGCTAAATAATCACTAGGTTTGTTTCTTCTAC AGGAGCTCCCCGAGCATAAAAATTATTAATGGAAAGTTCAAACTTCAAAGGTTGACAGACAGAC CGTTCCTTCAAGCATTTTCAACAATGCTTGTTGCACACCTTCACCTGAAACATCTCTGCTAAGA TTGATGCTTTCAGCCTGAAAAGCATTGCAATCAGAAATATAAAAGGAAAAAAAGGATAAAATGT ATGACAGGTGCCTAAATTAACTTATGAACAAACCTTCTTTGTTATTTTATCAACTTCATCAATA TAGACGATTCCCTGCTGGGCAGCAGCTACGTCGAAATCAGCAGCCTAGGGTGCAAAAGAGAAAT GTATAAAGATGAGTAGAAGCATCGGTAAACTAAGCGGAGTGCGATAAACATATTTCACTTCTAT TTTTGTTTGTATACTTCACTCTGCCTGGCTTGGAGACAAATCCAAAGTTTATGCTTTATATTAT CTTTTACGATCTTCACATACTTCATATGCCATGTCCCATCCCATGTTCATGACAGGATAAACAA CACTGGAGGATGGCTGAGCGGCAGTGGCTGCTAGGGAATGAATATAAGAGAACTAGATTATTAA TGTGCTTACTTTGAGAGTTAGATATCTCTTCACATAGAGCTGTTTATACTTGACTCCTAAGGAA GGATCTAATCTACTCCATGTCCTAACAAACTATATCCAGAATATAGCAAACTCAACTCTAATCA TACCTTCACATGAGGAAGGGAATTGACCATCTCAGTGCCCATTCCCCGGCAGGGCTAGTGCATA ACAGCACGAGTTTGGCTTCGCAATCACAGACACTGTGCAACCTAAAATAAGTGCTTTTACTATT TTTTCCCTTGAGAACACCACCTCCAGTTTTGAAATTTTGGTACTTGCTAAAATCTTCTAGAGCC CAATTATTATCATGAAAAAAGGTCTCAAGTAAAACAGGGGGTGGGGGAGGGGAGAAGGTTCTCC AGTTCAGGTTAGAATTACAATGCAGAAATGGCTAAAATGCAAGGTCCATATAATATAGAGAGTT GAGAGGTACCGCTAGGAGCTTATACAAAATAGATTCAACATCCTCACCAACATATCCAGC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.017789675

Conservation Information
Conserved circRNAs	NA
PMCS	0.017789675

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							133573712-133570178(-)
						
						Potential amino acid sequence
						
							MLEGTVVSVPEKGARRHPRGDNIQIDTKNILFICGGAFVDLEKTISERRHDSSIGFRAQVRSNM
RSGGVINAEITSSLLKSVESGDLIAYGLIPEFVGRFPILVGLSSLSEDQLVEVLTEPKNALGRQ
YTKLFEMNDVKLHFTEEALRLIAKRAISKNTGARGLRSILESILTEAMYEAGYVGEDVESILYK
LLAAADFDVAAAQQGIVYIDEVDKITKKAESINLSRDVSGEGVQQALLKMLEGTVVSVPEKGAR
RHPRGDNIQIDTKNILFICGGAFVDLEKTISERRHDSSIGFRAQVRSNMRSGGVINAEITSSLL
KSVESGDLIAYGLIPEFVGRFPILVGLSSLSEDQLVEVLTEPKNALGRQYTKLFEMNDVKLHFT
EEALRLIAKRAISKNTGARGLRSILESILTEAMYEAGYVGEDVESILYKLLAAADFDVAAAQQG
IVYIDEVDKITKKAESINLSRDVSGEGVQQALLKMLEGTVVSVPEKGARRHPRGDNIQIDTKNI
LFICGGAFVDLEKTISERRHDSSIGFRAQVRSNMRSGGVINAEITSSLLKSVESGDLIAYGLIP
EFVGRFPILVGLSSLSEDQLVEVLTEPKNALGRQYTKLFEMNDVKLHFTEEALRLIAKRAISKN
TGARGLRSILESILTEAMYEAGYVGEDVESILYKLLAAADFDVAAAQQGIVYIDEVDKITKKAE
SINLSRDVSGEGVQQALLKMLEGTVVSVPEKGARRHPRGDNIQIDTKNILFICGGAFVDLEKTI
SERRHDSSIGFRAQVRSNMRSGGVINAEITSSLLKSVESGDLIAYGLIPEFVGRFPILVGLSSL
SEDQLVEVLTEPKNALGRQYTKLFEMNDVKLHFTEEALRLIAKRAISKNTGARGLRSILESILT
EAMYE(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	133573712-133570178(-)
Potential amino acid sequence	MLEGTVVSVPEKGARRHPRGDNIQIDTKNILFICGGAFVDLEKTISERRHDSSIGFRAQVRSNM RSGGVINAEITSSLLKSVESGDLIAYGLIPEFVGRFPILVGLSSLSEDQLVEVLTEPKNALGRQ YTKLFEMNDVKLHFTEEALRLIAKRAISKNTGARGLRSILESILTEAMYEAGYVGEDVESILYK LLAAADFDVAAAQQGIVYIDEVDKITKKAESINLSRDVSGEGVQQALLKMLEGTVVSVPEKGAR RHPRGDNIQIDTKNILFICGGAFVDLEKTISERRHDSSIGFRAQVRSNMRSGGVINAEITSSLL KSVESGDLIAYGLIPEFVGRFPILVGLSSLSEDQLVEVLTEPKNALGRQYTKLFEMNDVKLHFT EEALRLIAKRAISKNTGARGLRSILESILTEAMYEAGYVGEDVESILYKLLAAADFDVAAAQQG IVYIDEVDKITKKAESINLSRDVSGEGVQQALLKMLEGTVVSVPEKGARRHPRGDNIQIDTKNI LFICGGAFVDLEKTISERRHDSSIGFRAQVRSNMRSGGVINAEITSSLLKSVESGDLIAYGLIP EFVGRFPILVGLSSLSEDQLVEVLTEPKNALGRQYTKLFEMNDVKLHFTEEALRLIAKRAISKN TGARGLRSILESILTEAMYEAGYVGEDVESILYKLLAAADFDVAAAQQGIVYIDEVDKITKKAE SINLSRDVSGEGVQQALLKMLEGTVVSVPEKGARRHPRGDNIQIDTKNILFICGGAFVDLEKTI SERRHDSSIGFRAQVRSNMRSGGVINAEITSSLLKSVESGDLIAYGLIPEFVGRFPILVGLSSL SEDQLVEVLTEPKNALGRQYTKLFEMNDVKLHFTEEALRLIAKRAISKNTGARGLRSILESILT EAMYE(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Han et al., 2020;Zhang et al., 2019

circRNA

Detail information of Zm00001d015948_circ_g.3

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