Detail information of Os05g0481100_circ_g.8


General Information
CircRNA Name Os05g0481100_circ_g.8
ID in PlantcircBase osa_circ_042142
Alias NA
Organism Oryza sativa
Position chr5: 23660912-23661105  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRI-long
Parent gene Os05g0481100
Parent gene annotation Similar to cDNA clone:J013034D11, full insert sequence. (Os05t04
81100-01);Similar to predicted protein. (Os05t0481100-02);Simila
r to cDNA clone:J013034D11, full insert sequence. (Os05t0481100-
03);Similar to cDNA clone:J013034D11, full insert sequence. (Os0
5t0481100-04);Similar to cDNA clone:J013034D11, full insert sequ
ence. (Os05t0481100-05);Similar to cDNA clone:J013021N20, full i
nsert sequence. (Os05t0481100-06)
Parent gene strand +
Alternative splicing Os05g0481100_circ_g.7 Os05g0481100_circ_g.9
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os05t0481100-05:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAATCTTATAGTTGATGTGCCTTCTTGAACCTGCTTATAGTGAATTGTGTAATACTTTGTTCTG
TTGCCAATATCCTTGTTCTACTTCAATCTCCTCcacatggctagttcttttatcccactgatct
actgcaatcctgaactgactcctatggctttgatatcaagatcagccattcagttgtcagttta
ct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 194
Transcript exons: 23660912-23661105
CACATGGCTAGTTCTTTTATCCCACTGATCTACTGCAATCCTGAACTGACTCCTATGGCTTTGA
TATCAAGATCAGCCATTCAGTTGTCAGTTTACTGAATCTTATAGTTGATGTGCCTTCTTGAACC
TGCTTATAGTGAATTGTGTAATACTTTGTTCTGTTGCCAATATCCTTGTTCTACTTCAATCTCC
TC

Genomic sequence CACATGGCTAGTTCTTTTATCCCACTGATCTACTGCAATCCTGAACTGACTCCTATGGCTTTGA
TATCAAGATCAGCCATTCAGTTGTCAGTTTACTGAATCTTATAGTTGATGTGCCTTCTTGAACC
TGCTTATAGTGAATTGTGTAATACTTTGTTCTGTTGCCAATATCCTTGTTCTACTTCAATCTCC
TC
Conservation Information
Conserved circRNAs NA
PMCS 0.109106529
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study