Detail information of BGIOSGA003449_circ_g.2


General Information
CircRNA Name BGIOSGA003449_circ_g.2
ID in PlantcircBase osi_circ_002038
Alias 1:15004739|15005632
Organism Oryza sativa ssp. indica
Position chr1: 15004739-15005632  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA003449
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA003449_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered BGIOSGA003449-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACACAATCATGTTCAATGGGTTCGCGGAGCTTGGCATGACTGTCATGAAGCTTCCTGTCTTCTT
CAAGCAGAGGGATCTTCTATTCTTCCCTGCATGGACcagattgtgaattccattgggcagacca
tccgtatccttggtggaactgctgtcatctccttgctacagccggcacctgaaacatacaactt
atttgatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGATTGTGAATTCCATTGGGCAGACCATCCGTATCCTTGGTGGAACTGCTGTCATCTCCTTGC
TACAGCCGGCACCTGAAACATACAACTTATTTGATGACATTATACTCCTCTCAGACGGGCAGAT
TGTGTACCAGGGTGCTCGCGAACATGTGCTCGAGTTCTTCGAGTTGATGGGCTTCAGATGCCCC
CAAAGAAAAGGAGTTGCTGACTTCTTGCAGGAAGTATGTGTAATTATCTACAAGTTACCATGCC
AATTAGTGATTCTGATTGCAAAGATGAAAGTTACTGTTATCTGAAATTCTGTATACATTGAACA
GGTGACATCAAAGAAAGACCAGGAACAGTATTGGTATAGGAATGACATACCATACTCTTTCGTG
CCTGTGAAGCAATTCGCAGATGCATTCCGTTCCTTCCACGTGGGACAGTCTATTCAGAATGAAC
TTTCGGAGCCATTTGATAGGAGCAGGAGCCACCCTGCTTCTCTTGCTACCTCCAAGTTTGGAGT
TAGCTGGATGGCGTTGCTCAAAGCCAATATTGATAGAGAGCTTCTACTCATGAAGAGGAACTCG
TTTGTGTACATCTTTAAAGCTGCCAATGTAAGTTCAGACCTATGGCTTGGTCTTCTTTTTAATA
TTGAGATGAAGATTACCTGACACCAATCTGAATTTTACATCATCACAGTTAACTCTTACCGCGT
TCCTCGTAATGACCACGTTTCTTCGTACCAAAATGCGCCATGATACAACTTATGGAACGATCTA
TATGGGGGCTCTGTACTTTGCCCTTGACACAATCATGTTCAATGGGTTCGCGGAGCTTGGCATG
ACTGTCATGAAGCTTCCTGTCTTCTTCAAGCAGAGGGATCTTCTATTCTTCCCTGCATGGAC
Conservation Information
Conserved circRNAs osa_circ_001648*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021