Detail information of Os01g0342500_circ_ig.1


General Information
CircRNA Name Os01g0342500_circ_ig.1
ID in PlantcircBase osa_circ_001648
Alias Os_ciR1736
Organism Oryza sativa
Position chr1: 13522883-13523777  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads 9
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACACAATCATGTTCAATGGGTTCGCGGAGCTTGGCATGACTGTCATGAAGCTTCCTGTCTTCTT
CAAGCAGAGGGATCTTCTATTCTTCCCTGCATGGACcagattgtgaattccattgggcagacca
tccgtatccttggtggaactgctgtcatctccttgctacagccggcacctgaaacatacaactt
atttgatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGATTGTGAATTCCATTGGGCAGACCATCCGTATCCTTGGTGGAACTGCTGTCATCTCCTTGC
TACAGCCGGCACCTGAAACATACAACTTATTTGATGACATTATACTCCTCTCAGACGGGCAGAT
TGTGTACCAGGGTGCCCGCGAACATGTGCTCGAGTTCTTCGAGTTGATGGGCTTCAGATGCCCC
CAAAGAAAAGGAGTTGCTGACTTCTTGCAGGAAGTATGTGTAATTATCTACAAGTTACCATGCC
AATTAGTGATTCTGATTTGCAAAGATGAAAGTTACTGTTATCTGAAATTCTGTATACATTGAAC
AGGTGACATCAAAGAAAGACCAGGAACAGTATTGGTATAGGAATGACATACCATACTCTTTCGT
GCCTGTGAAGCAATTCGCAGATGCATTCCGTTCCTTCCACGTGGGACAGTCTATTCAGAATGAA
CTTTCGGAGCCATTTGATAGGAGCAGGAGCCACCCTGCTTCTCTTGCTACCTCCAAGTTTGGAG
TTAGCTGGATGGCGTTGCTCAAAGCCAATATTGATAGAGAGCTTCTACTCATGAAGAGGAACTC
GTTTGTGTACATCTTTAAAGCTGCCAATGTAAGTTCAGACCTATGGCTTGGTCTTCTTTTTAAT
ATTGAGATGAAGATTACCTGACACCAATCTGAATTTTACATCATCACAGTTAACTCTTACCGCG
TTCCTCGTAATGACCACGTTTCTTCGTACCAAAATGCGCCATGATACAACTTATGGAACGATCT
ATATGGGGGCTCTGTACTTTGCCCTTGACACAATCATGTTCAATGGGTTCGCGGAGCTTGGCAT
GACTGTCATGAAGCTTCCTGTCTTCTTCAAGCAGAGGGATCTTCTATTCTTCCCTGCATGGAC
Conservation Information
Conserved circRNAs osi_circ_002038* osi_circ_009373
PMCS 0.560969544
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015