Detail information of Solyc05g018650.2_circ_g.2


General Information
CircRNA Name Solyc05g018650.2_circ_g.2
ID in PlantcircBase sly_circ_001734
Alias NA
Organism Solanum lycopersicum
Position chr5: 22688255-22693249  JBrowse»
Reference genome SL2.50.38
Type   ei-circRNA
Identification method CIRI; find_circ
Parent gene Solyc05g018650.2
Parent gene annotation Ferrochelatase
Parent gene strand -
Alternative splicing Solyc05g018650.2_circ_g.1 Solyc05g018650.2_circ_g.3 Solyc05g018650.2_circ_g.4 Solyc05g018650.2_circ_g.5
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   CT-CA
Number of exons covered Solyc05g018650.2.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATATACTCTCTAATAGGCGAAGGCTTGAACCACTCGTAGATATTGAAAACTGTGGATAAAGAGG
GAGAACAACAAGCTTTGTGATTCCATCCCTTTTAATcctggcgagcttcaagatttgagactgc
cattgctccaacatatggaagactttcaatcactgcatctgccaaatctgaaatgaaagtgggt
tcaacacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGGCGAGCTTCAAGATTTGAGACTGCCATTGCTCCAACATATGGAAGACTTTCAATCACTGC
ATCTGCCAAATCTGAAATGAAAGTGGGTTCAACACCTAGGGCAGGAACACGTGCCCAGTTCTGT
ATTCCAGACTCCAATGCTAGCTCCTTGTATTCAACATCAATTTCCTCTAATGTCTCAATATGCT
CACTTACAAAACTGTGATAACATATAAAAATTAGAGAATACAAATAACTAAAACAAAAGTCGAA
CAAACTAGGCATCATCATTTGTACTGCTTAAACAGCCAAATTTGCTTACCTTATTGGCACGGCA
AGAAGACTCTTTACCCCTTTTTTCCCAAGCTCAATTATTGTCTCATCAGTATATGGTTTAAGCC
ATTCAACAGGTCCAACCCTACTCTGCATCAGAGCAAAATAACTTCATGGAATGGCTGAGTAAAA
GCATTTACAAAACTCAATCATGATGCTCTTAAGTGAGAAAAGCTGCATCCATATGCATACAGAA
TTACAGTAAAGCACATCAGTTCAGTAAGTCATGTATCCGAAATGCCACCGGTAAATACTTGTTT
TGAAGTCGATCCAAGAAAATAACTTTTATTTTTATGACAGTGGTGTCCGTACAGCTTGCGCGCA
CTCTCGAGTACTCCATCACAACCTGCTACCTTCCACCAACACATGTACCGGTTAACACTGTCCA
CCAACACTTAGGTAGATGGAAAGAAATCACCTAGTGTTTTTGCCTGTACTGAGATTTGAACTTT
GAGAGCTCAAGAAAATAACTTGTTTTTTGCATCCAAATAACTTATCAATGCCAGATGGAATCAA
AATCACTTGACCACATACTCTATCACCCAAGCAAATTGGAGAATCAATGTTACAAAAGCTATAT
ATTATGTGCTAGCAAATGAGCATCCAAGCCTCATCTATTTTTCTCGTCCAATAGTGTATCACTT
GACAACATCATAAATATGAATCACCTTTCCTTAGAAATGTATTAAACAAATAATAATAAGCACC
AAATATCATGTTTGTGCCGATGGAAACACATAATACGACATTGAATGTAGCACCCTCTAAGTTC
ATAAAATTGACACCAATAAAGGGCCACATTACCTTCTCATACATAGAGGTGTTATGCTTATAAC
ATGAAAGTGTTCAGTACTCGTGTCTCACACTCCATATTAGCTAATTATATTTGTAATGCAACTT
AGAAAGTTCATATGGTACAACATGATACTTCAATAGAAAGTAGCAATTAGTCCCCTCAACTATT
GTTGCGGAAAAAGTGTGTACAAAGGAAAAAAGCTTCTTCATGTTCATACTAATAGTTACGCACG
TACTCCTTTACATACTAACATGGAGTGCTTAATATGTTATTCTCAAGTTCACCATATAATCTAA
TTCTCTTATCAACCTTATAGATTGAAGAGGTGATATGGAGATAGTTTTGCCAACAATGCATGTC
ATGCATGATACTATTATACATATCATTTCTGTAACGCCCCGTACTTTTGGTCTAAGGTTTAAAT
GGTTCGACGTATGTAATTGGACCCCAACCTGGAGAATTTGGTTTTACATGTCTAAAAGGCAATG
TTTAAGTATGCGGTGTTAAGGATGTGAATTAAAGTCTAACGGAAACTCTAGCACAAAGTCGGCT
TGAAAACTTCTCCACAAATTAAGTTTTAAGCTTGCACAAGGTGTAACTTCTAGCAAGCATATCT
CCCATGTATAAAGATTTATATGATGAATTTCCTACCATAGTTAAAAGATCACTGAATCTAGTTT
CCAATGAATTAAATAGTTCGTCAATCAGAGCTATGTACAAGAAGTTATGTACGTTTTACAAAAG
TGATATTAGTGGATAACATGTAGGGGCCTACGGGCATAGGTTGCCGTAGGAACTATATGTGGAT
TAAAGTTTGAGGTAGCCTCAGAAACATTTAGGTGCCCACCTACGACCATATGTGGCCATCTATC
AACTTCATTAAATACACCAAACTCTGAGGGTTTACTTCATTTTCTCACTTCGACCTTGACTTGA
AATAGATTCTCTCAGCTCCACTCCCCTAATCCCCACGGTCTTTCATGAGTGTTTCTTCAATGAT
TACGCAACTCTAACACCTCTTCCTCTTCAAATTTTGGAGGGTGTTATCATCTAGGGCTAAAGCG
GAGATTTTTGGTTTTTCTTCATCATTCAAGGTAAGAATCTTCTCCTAAGCTCATGCATGGACTA
TTATTGATGTAACATGAATGTTTCAGGGAAGGGACTCATGGGATGGTGATCGAAAGCCATGAGC
TTGGGTTTTGGATAATTTTGTGAGAAGATGGGGCTTGTTATGGTAGAGAGTTCTTGATATGCTG
CTGCCTAGAGGGGTGTGGACGACCTCGTAAGAGGGTTGTTGTGTTATTGTTGTGTTGAAGAATG
AAAAAGTCTTACATCGAGGGTTAATGAGATGGTTGGTCTACTTATAAGGCTTTGCAATCCTCTT
TCCTTTGAGCTATCTTTTGGGGTATTCTATAGGCCCAAGACCTAATTTTACATGGTATCAGAGC
AAAAGCAGGACCCATTTCACCCAATGTTGAGCCCTCAAATTAAAATTTTCCGCACAAGATGTCC
AGCCCTAGGCGTGAGGTGAGGTGTTGAAGTATGAAGAAGTATCACATTGGTGGTCTCCTTATAA
AGCTAAGACAATCCTCTTCGTTTTGAGCTAGCTTTTAGGGGGTGAGTTAGGTTCAAGATTGCAA
GACCTAATTTTACAGTTTGCAAGGAGAAGGTTGATTGTGGATATGCCAATGAAAAAGGATTTTA
GAGTTTTAGCTCACCGTATGTGCGATAAATTGCTTAAGTGGCTTTGTCTTGAATCTCTTTACTA
ATTTAATCTTTTTATGATTGTTTTCTTGTAGATTAAGGTCTTATCAGAGTAGTTAGACTTTGTG
GTACACTTAAGGTTGAAATTGAGGAATTAAAGCTAAGACCCTCTTTTCCTTGTCATGACATGAT
CTTATGATCTTTCTTTCGGTATTTTCCCCTTGTTCATGAGCTTATGGATTTCATGTTCCAAATT
ATACTATTGAGTACTCTATGTGAAAATTCTTTCATGTCAAATTATACTATTTTTTATTTCATTT
TTATAACTGAGAAATCCGTGTTGACCCGCCCTTTGGACCAAACACAGCCATCTAAACTACGTGG
ATAATGGGCCCGCCCCTCTACCCTTCTCCACTTAAATACTGAGCTTTGCTTTGCATGGAGTGGG
GCTTGAACCTGCGACCTAAACCTCAAATCCTCCACCTTTTGTCACTCAAGCTAGGTCTTGGGGG
CATGTCAAACTATACTATTAGCCTTGAATAATTTTAGCTTCCTATTATCGTTTTCTTGTAGATT
AAGGTCTTATCTGAGTAGTCGGTCTTTGTGGCCCGCCCGTTCACCCTTTTCATGACATGATCTT
TCTTTCGATACATTCCCCCTTGATCTTTCTTAGTAGTTGTATTCATTGCCTTGTGTCTACCATA
CCTTCATGCCGAGTTCATTAGCTCCTCATGGATATGTCTAATGTCATACATATCAAAATTGACA
CATTTCTACCTAAAAGTTATGTCTAAGAACAAGGAAATGCTTTGTAAGCCGAAGGCACGAAATA
GTAAGTGCTGTCCATGTGCACTCAACTGAACACCAACTGAACTCTTGACCTTTCTTATAAATGA
TCATAAAGATGAGCCCAAATACAAAATGTGCAAGAAGCCAGAGTCTTCATCTTCATTACAAGAA
TGTTTTAATGCATAAGATAGACAATGTCACCTGTGCAAGTGTGTTTAAATATAATCATTTGTAA
AATGTAAGTATGCTAATAGATCTGCAAAGGTACCTGATATGCCAAAGTATATGCATTATGTACC
CTTCTCTTCTCAAGTTCTTCCATTATTAAGTCCACACATTCCTCCATCTCAGCCTTGTATGGAT
CACCTGCTTCCTCTACATATGCAAGTGGTACACCATGAGCACTGAAGAATATCATCACCTGTGT
ATATGAAGCTAGTTAATGCAGGAGACAAATTAGAGAGATTTTTCTACTTCTTGGGAAGACCCTG
CTTTTATTTTCATTATAAAATATCTGAAAATTTTTCATAAATATGAAATGTAGAGGAGTAGAGG
CAGGAACAGAACAGTGTCAGATCTGAATAAAAGAAATCTTTGCTCCAGAGTGCTGTAGTTTTCC
TTTGTTTTTGATCCTTAATATCTTCTACTGTACAGAGATCTTTCCATGGCTCTGTATTTCTACC
CTAACCAACTCGATAGAGTTTCCAGAGAAGGTCTCCAAGCATAAGACTTGATGGACAATAATAC
ACTAAATCAAGAGTATCACAACATTCATGACAAGAATCTTTTCTCATTTACTTTTTTGAAACTG
GTAAAATTAAATCTTTAAGCATTTATCTTTATTAAAAAAAAAATCTTACAGCATTTATTACAGA
AGAAAGCAAAACTGAGAAGGCATATACTTTTGCGAGAATTTTCTAGTTTAAGTAATGAAAACAA
AAATAAAAATGCACAACTACTTTATGTGCCTCAAGTATAATACTATCAGGAAGATGAGACCTTA
TTAGGAAAAAGAACTTTTCACGAGGTAAGTATAGCATGAGACATCCAAGAATAGAGACAATACT
ACCTCCTCCGGACGTTCAAACATGTTCAACTCTTTTTCCATCAAATCTGCCATGGCTTTGATAT
ATCCTTCCCGTTGATACCATGAGGGTATTACTGTGTGTTGCATGTTAACAAGATACTCATCCTC
CCTGATGTTAATACTCATTGCTCCATATATCAGTTTGACAATCGAAAATGGAATGTATTTTCTG
AACAGGAACATAGGGTATGTTTATTACCTAAATATACTCTCTAATAGGCGAAGGCTTGAACCAC
TCGTAGATATTGAAAACTGTGGATAAAGAGGGAGAACAACAAGCTTTGTGATTCCATCCCTTTT
AAT
Conservation Information
Conserved circRNAs NA
PMCS 0.175823909
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Yang et al., 2020