Plant Circular RNA Database

Detail information of Os06g0665500_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os06g0665500_circ_g.1
					
						ID in PlantcircBase
						osa_circ_031889
					
						Alias
						Os06circ15973
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 27496101-27499505  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						SMALT, Segemehl
					
						Parent gene
						
							Os06g0665500						
					
						Parent gene annotation
						
							Peptidase M20 domain containing protein. (Os06t0665500-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os06g0665500_circ_g.2 Os06g0665500_circ_g.3 Os06g0665500_circ_g.4 Os06g0665500_circ_g.5 Os06g0665500_circ_g.6 Os06g0665500_circ_g.7 Os06g0665500_circ_g.8 Os06g0665500_circ_g.9 Os06g0665500_circ_g.10 						
					
						Support reads
						2
					
						Tissues
						leaf
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0665500-01:9

General Information
CircRNA Name	Os06g0665500_circ_g.1
ID in PlantcircBase	osa_circ_031889
Alias	Os06circ15973
Organism	Oryza sativa
Position	chr6: 27496101-27499505 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	SMALT, Segemehl
Parent gene	Os06g0665500
Parent gene annotation	Peptidase M20 domain containing protein. (Os06t0665500-01)
Parent gene strand	-
Alternative splicing	Os06g0665500_circ_g.2 Os06g0665500_circ_g.3 Os06g0665500_circ_g.4 Os06g0665500_circ_g.5 Os06g0665500_circ_g.6 Os06g0665500_circ_g.7 Os06g0665500_circ_g.8 Os06g0665500_circ_g.9 Os06g0665500_circ_g.10
Support reads	2
Tissues	leaf
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0665500-01:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GTAGGCGGAGAGGATGAGGAGGTGGATGGATGGGTGGCGCCTGGGGTAGGAGAGGAGGAGAGCC
ATGGCCACTTTTGTGTTGTGCTTGTGTGTGTGTGGCgttgctggcgctgggccatgtcaggagc
tcgccgacggtgcagacgagtccggcgagggattcctcagtgaagcagccgcattcctcgtcgt
aggtgagg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GTTGCTGGCGCTGGGCCATGTCAGGAGCTCGCCGACGGTGCAGACGAGTCCGGCGAGGGATTCC
TCAGTGAAGCAGCCGCATTCCTCGTCGTAGGTGAGGAACTTGTTGGGTTCTTTGCAGAGCGTCT
CCAGTGTCAGGACGAGCTCTGCAGCTGCAACCATCGGATCACGGCGCAATTTCATTGGAACCGT
GCCAGCATGCCCTTGTGAACCATTTATAATTACCTAAAGAAACCAGAAAGTTGCTAAGCAATGG
CAGTTGAAAGCAAGCCCAGCTTGTTTGATCGATTATATTTTGGCCAGCACCTACTAATCTGTTA
CTGTGGGCATCGAGATTGAAAACTAGTTTAATTAGTTTTTGTAGTGTAAGGAAGCACTGCTCAT
GCTAAAATCACACTGAGATTAACGGATTTGGATAATTCAGAACAATATCAAACATCAACCTTGG
TGATAGTCAGCTAAGCTGGTTATCACTGTTTATTAAAGAAAGCTCATGCTATAACATTTTACTT
GATTTGCAAGTACCAACTCTACGCTGGTGCAGTCTTTCAAAATAGTTTGTTAAACGAGAATCTT
GTGAAGTACTAATAAAGTTCTTCAGTTGTCACTGATTAATAGTACCTGACCTCAGCGTTGACTT
CGAGCACTGACATTCTTTGCTAAAGAATGACCAGCAATATAATTGCTTACTTGATTGTTTACTA
GGTCCTGGTCATTTTAGCATGCCAATTGTTTGGAAAAGTTGGTCTAAATTTAGTATGCAATGCT
ACCTGGTCATCTTTTAGTTTTGTTTTCAGAAACAAGTCATATTTTTGTTTTGGCTCACATATAT
AGTTCTATAAGTGTCACCGCTTACTCTTGACCAAAAAAGTATTAACTAGAAAGTGATTGCACCT
TTAATCGCGTCTGTCCTGCAATTCCTTTTACAACACCAAGCGGATAACGAAGGGCTTCCAGGAC
AGGCCCTTGTTCAATGTGAACCTAACCAAAATAGTAATGAAAAAGAATGGTAAATGCTAAATTT
CTTATATCTGTTATACACCTAGATTAAAATAATACAGTCTTGTATACCTCGACATAACTCCCGA
CAGACTCCGGGCTGTACCTTACTTCACCAAGAGCATTAGCAGTGCCCTCAAGAGAATTCAGCTT
TAGGACATCTTGAACTGTCGTGCCACTGAAGAAGTTGAATGCAAAATATATACTGAATCAGCAA
ACAATTTCAAAAAACAGTTCGGTTGATTTATGCGAAAAAAGACAACCTCTTGTCAGATACTTGT
AAAATTGATTCAGGTAGTGTACCAGCTACAGCGGCGCTTCCCAGAAAAGTTGTTTGGAATCTAA
CACCCTCCTCATCGCTGAATGCAATCACCTGAGGTTTACCAGGCAACCGTGAGGCCCAACAGCT
TTATGAATTATAGATATCAGAATAAGGTATAGGTTCTTCTCTACATAAGCAGGGAAACAGCCAA
CTGAGTAAAGAGACATTATATAATGGATTCATCCTGGATTAAATATGTCTATATCTGTAGTCTT
TCTGATAATCTATTGTGATAGCAGCCCATTCACGTTCTTTGAAACCTACTATGCTAATTTAAAT
CAACACGAGATCGATGATGTGGATGACACATACTAAGATACTAGTAAAATACACAAGACAGAGA
CAAGTTATGTGCAGATAAATGTCTTATTTGTAGGACACATGTGACTCATCATGCAACTAGTAAG
GAGTAGGATAGCGACTAATGTAACCCAATACATATATTCTTATGAAAGAAACAAACTATGATGA
TAAAGTAGTAACATCACTAGCACACTGATGAAAACATTTTATCTAGGGTAATTAATTTTTATCT
AACCTCTACTGGTCTAGTAAGTCTCTGAAGTCTCCCAGTAACTTTCAAAACCTTCAAAGCAGAG
ATTGCAGAGATAATACCCAAAGCTCCGTCATACATGCCAGCATCAATAACAGTGTCCTGTTTTC
CCCCCAAAAAAAAACAAGATTTATTTTTTTTATCAGTGATTTTATTTAACTAGAAGATGTGCGA
CAGTATGAAAAGATATATCTATTTCTCACCATGTGAGATCCGATCAACAAGGCCTCCTTGGTTG
AGTTGGTCGGTTCAAATCGACCATGAATATTCCCCATTTGATCAATCCACCTTAATATAAGGCA
TATATTGGTCAGCAAAGGTCAAAGTTTGAGAAAATGACTGCAGTATAAACAAGAGAAGAAAAAT
CTACGTGGTAAGTCCGGCATCTTTCATCCAGCTGATAATGACAGCAGAGGCTCTGATTGAGGCA
GGACTCAAAAATGTCCTCTCAAGGTAACCTTCCCCATCAGATATCTGATTCACACAAAACGACG
CCGTGTTAGGACTGCATGGCTAAACTGTTAGGCAATAGAGTAAAAATAAGGTGCAGCACGGATC
TTTGAAACCAGGATTTTGTTCAGTTTATATATATTTAATATTTCAACTGGAGAACGTAAAAATT
GAGCAACCTTCATAGCGTAAGGTCATCTCACCCGAATACAGGAGATGGATATGATTCTTTGGAA
TGACCAATAAACATAACTAATAGAGAAAAGGAACAAAAGCCTTACAAAAGTTTGATGCTTTAAC
GCCTAGTAAAATGAAATTCACCCCAAAAAAGAAGAGATGAGAAGCCTAGAATATATTTGCAATC
CTTTTGCATAATTTTCGAGTAGCCTGCAGCTAGCTGTCTTGATATGGTCTGTACTGGTAAGTTA
TACAAAATGAAATTGTATTCTCTCCGAGGAAAGAGTGAAATTGTATCCTAAAAATGAAATTTAC
ACTGTTCATCTGATGAACAAAGAAGTGTACACACATGAACCCCACAGATATTTTTTTAAACCTA
TATATGGTCATTTGGGTGTCAATAGCTGTCCACATATAACACCTAGAATTAATTTATATTTCCA
ATTATGAAGCTATCTGAATTAGCAACAAACAGAGGTAGCAGCATGCAGGAGCCCAAACAATCTA
TACAATCCGGACGAGATTCCCCTTAAAAAGTGGATCAAAGAACTGAATATTCCAACGACATGAA
GAACCTGACCTTGCCAAGTTCTTTGAGCCTGAGCACCGTCTCATCCCTGAGGATCTCCCTGTAG
AGCCCATCTCCTCCCAGCTCCAATCCATCTAACAATCAGACACCACAAAAAAACATCCATCACA
AACAAAGAAACAAAATCAGAAAGAAGAAGCAATTTCTGATAGATGGCAATGAAGTGGATGATCC
AAGAACCAAGACCCACCCAAGATTGGGAGGAGGAAGAGGGCGTAGGCGGAGAGGATGAGGAGGT
GGATGGATGGGTGGCGCCTGGGGTAGGAGAGGAGGAGAGCCATGGCCACTTTTGTGTTGTGCTT
GTGTGTGTGTGGC
						
					

			
		

Sequences
Splice junction sequence	GTAGGCGGAGAGGATGAGGAGGTGGATGGATGGGTGGCGCCTGGGGTAGGAGAGGAGGAGAGCC ATGGCCACTTTTGTGTTGTGCTTGTGTGTGTGTGGCgttgctggcgctgggccatgtcaggagc tcgccgacggtgcagacgagtccggcgagggattcctcagtgaagcagccgcattcctcgtcgt aggtgagg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTTGCTGGCGCTGGGCCATGTCAGGAGCTCGCCGACGGTGCAGACGAGTCCGGCGAGGGATTCC TCAGTGAAGCAGCCGCATTCCTCGTCGTAGGTGAGGAACTTGTTGGGTTCTTTGCAGAGCGTCT CCAGTGTCAGGACGAGCTCTGCAGCTGCAACCATCGGATCACGGCGCAATTTCATTGGAACCGT GCCAGCATGCCCTTGTGAACCATTTATAATTACCTAAAGAAACCAGAAAGTTGCTAAGCAATGG CAGTTGAAAGCAAGCCCAGCTTGTTTGATCGATTATATTTTGGCCAGCACCTACTAATCTGTTA CTGTGGGCATCGAGATTGAAAACTAGTTTAATTAGTTTTTGTAGTGTAAGGAAGCACTGCTCAT GCTAAAATCACACTGAGATTAACGGATTTGGATAATTCAGAACAATATCAAACATCAACCTTGG TGATAGTCAGCTAAGCTGGTTATCACTGTTTATTAAAGAAAGCTCATGCTATAACATTTTACTT GATTTGCAAGTACCAACTCTACGCTGGTGCAGTCTTTCAAAATAGTTTGTTAAACGAGAATCTT GTGAAGTACTAATAAAGTTCTTCAGTTGTCACTGATTAATAGTACCTGACCTCAGCGTTGACTT CGAGCACTGACATTCTTTGCTAAAGAATGACCAGCAATATAATTGCTTACTTGATTGTTTACTA GGTCCTGGTCATTTTAGCATGCCAATTGTTTGGAAAAGTTGGTCTAAATTTAGTATGCAATGCT ACCTGGTCATCTTTTAGTTTTGTTTTCAGAAACAAGTCATATTTTTGTTTTGGCTCACATATAT AGTTCTATAAGTGTCACCGCTTACTCTTGACCAAAAAAGTATTAACTAGAAAGTGATTGCACCT TTAATCGCGTCTGTCCTGCAATTCCTTTTACAACACCAAGCGGATAACGAAGGGCTTCCAGGAC AGGCCCTTGTTCAATGTGAACCTAACCAAAATAGTAATGAAAAAGAATGGTAAATGCTAAATTT CTTATATCTGTTATACACCTAGATTAAAATAATACAGTCTTGTATACCTCGACATAACTCCCGA CAGACTCCGGGCTGTACCTTACTTCACCAAGAGCATTAGCAGTGCCCTCAAGAGAATTCAGCTT TAGGACATCTTGAACTGTCGTGCCACTGAAGAAGTTGAATGCAAAATATATACTGAATCAGCAA ACAATTTCAAAAAACAGTTCGGTTGATTTATGCGAAAAAAGACAACCTCTTGTCAGATACTTGT AAAATTGATTCAGGTAGTGTACCAGCTACAGCGGCGCTTCCCAGAAAAGTTGTTTGGAATCTAA CACCCTCCTCATCGCTGAATGCAATCACCTGAGGTTTACCAGGCAACCGTGAGGCCCAACAGCT TTATGAATTATAGATATCAGAATAAGGTATAGGTTCTTCTCTACATAAGCAGGGAAACAGCCAA CTGAGTAAAGAGACATTATATAATGGATTCATCCTGGATTAAATATGTCTATATCTGTAGTCTT TCTGATAATCTATTGTGATAGCAGCCCATTCACGTTCTTTGAAACCTACTATGCTAATTTAAAT CAACACGAGATCGATGATGTGGATGACACATACTAAGATACTAGTAAAATACACAAGACAGAGA CAAGTTATGTGCAGATAAATGTCTTATTTGTAGGACACATGTGACTCATCATGCAACTAGTAAG GAGTAGGATAGCGACTAATGTAACCCAATACATATATTCTTATGAAAGAAACAAACTATGATGA TAAAGTAGTAACATCACTAGCACACTGATGAAAACATTTTATCTAGGGTAATTAATTTTTATCT AACCTCTACTGGTCTAGTAAGTCTCTGAAGTCTCCCAGTAACTTTCAAAACCTTCAAAGCAGAG ATTGCAGAGATAATACCCAAAGCTCCGTCATACATGCCAGCATCAATAACAGTGTCCTGTTTTC CCCCCAAAAAAAAACAAGATTTATTTTTTTTATCAGTGATTTTATTTAACTAGAAGATGTGCGA CAGTATGAAAAGATATATCTATTTCTCACCATGTGAGATCCGATCAACAAGGCCTCCTTGGTTG AGTTGGTCGGTTCAAATCGACCATGAATATTCCCCATTTGATCAATCCACCTTAATATAAGGCA TATATTGGTCAGCAAAGGTCAAAGTTTGAGAAAATGACTGCAGTATAAACAAGAGAAGAAAAAT CTACGTGGTAAGTCCGGCATCTTTCATCCAGCTGATAATGACAGCAGAGGCTCTGATTGAGGCA GGACTCAAAAATGTCCTCTCAAGGTAACCTTCCCCATCAGATATCTGATTCACACAAAACGACG CCGTGTTAGGACTGCATGGCTAAACTGTTAGGCAATAGAGTAAAAATAAGGTGCAGCACGGATC TTTGAAACCAGGATTTTGTTCAGTTTATATATATTTAATATTTCAACTGGAGAACGTAAAAATT GAGCAACCTTCATAGCGTAAGGTCATCTCACCCGAATACAGGAGATGGATATGATTCTTTGGAA TGACCAATAAACATAACTAATAGAGAAAAGGAACAAAAGCCTTACAAAAGTTTGATGCTTTAAC GCCTAGTAAAATGAAATTCACCCCAAAAAAGAAGAGATGAGAAGCCTAGAATATATTTGCAATC CTTTTGCATAATTTTCGAGTAGCCTGCAGCTAGCTGTCTTGATATGGTCTGTACTGGTAAGTTA TACAAAATGAAATTGTATTCTCTCCGAGGAAAGAGTGAAATTGTATCCTAAAAATGAAATTTAC ACTGTTCATCTGATGAACAAAGAAGTGTACACACATGAACCCCACAGATATTTTTTTAAACCTA TATATGGTCATTTGGGTGTCAATAGCTGTCCACATATAACACCTAGAATTAATTTATATTTCCA ATTATGAAGCTATCTGAATTAGCAACAAACAGAGGTAGCAGCATGCAGGAGCCCAAACAATCTA TACAATCCGGACGAGATTCCCCTTAAAAAGTGGATCAAAGAACTGAATATTCCAACGACATGAA GAACCTGACCTTGCCAAGTTCTTTGAGCCTGAGCACCGTCTCATCCCTGAGGATCTCCCTGTAG AGCCCATCTCCTCCCAGCTCCAATCCATCTAACAATCAGACACCACAAAAAAACATCCATCACA AACAAAGAAACAAAATCAGAAAGAAGAAGCAATTTCTGATAGATGGCAATGAAGTGGATGATCC AAGAACCAAGACCCACCCAAGATTGGGAGGAGGAAGAGGGCGTAGGCGGAGAGGATGAGGAGGT GGATGGATGGGTGGCGCCTGGGGTAGGAGAGGAGGAGAGCCATGGCCACTTTTGTGTTGTGCTT GTGTGTGTGTGGC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.120068911

Conservation Information
Conserved circRNAs	NA
PMCS	0.120068911

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							osa-miR171h 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	osa-miR171h
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015

circRNA

Detail information of Os06g0665500_circ_g.1

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