Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G09210_circ_g.12 |
ID in PlantcircBase | ath_circ_001607 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 2974928-2975032 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, CIRI, CIRI-full, PcircRNA_finder, circRNA_finder |
Parent gene | AT1G09210 |
Parent gene annotation |
Calreticulin-2 |
Parent gene strand | - |
Alternative splicing | AT1G09210_circ_g.1 AT1G09210_circ_g.2 AT1G09210_circ_g.3 AT1G09210_circ_g.4 AT1G09210_circ_g.5 AT1G09210_circ_g.6 AT1G09210_circ_g.7 AT1G09210_circ_g.8 AT1G09210_circ_g.9 AT1G09210_circ_g.10 AT1G09210_circ_g.11 AT1G09210_circ_g.13 AT1G09210_circ_g.14 AT1G09210_circ_g.15 AT1G09210_circ_g.16 |
Support reads | 38 |
Tissues | leaf, aerial, inflorescences, whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G09210.1:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.548083202 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2974969-2974930(-) |
Potential amino acid sequence |
MISLRRSQTPTQRSLRTGTNKNTFLTLKTRNLTVTMISLRRSQTPTQRSLRTGTNKNTFLTLKT RNLTVTMISLRRSQTPTQRSLRTGTNKNTFLTLKTRNLTVTMISLRRSQTPTQR(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |