Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G09210_circ_g.5 |
ID in PlantcircBase | ath_circ_001600 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 2973718-2975032 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT1G09210 |
Parent gene annotation |
Calreticulin-2 |
Parent gene strand | - |
Alternative splicing | AT1G09210_circ_g.1 AT1G09210_circ_g.2 AT1G09210_circ_g.3 AT1G09210_circ_g.4 AT1G09210_circ_g.6 AT1G09210_circ_g.7 AT1G09210_circ_g.8 AT1G09210_circ_g.9 AT1G09210_circ_g.10 AT1G09210_circ_g.11 AT1G09210_circ_g.12 AT1G09210_circ_g.13 AT1G09210_circ_g.14 AT1G09210_circ_g.15 AT1G09210_circ_g.16 |
Support reads | 5 |
Tissues | seedlings |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G09210.1:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.166876861 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2974776-2973720(-) |
Potential amino acid sequence |
MGEWKPKQIKNPNYKGKWEAPLIDNPDFKDDPELYVFPKLKYVGLELWQVKSGSLFDNVLICDD PDYAKKLADETWGKLKDAEKAAFDEAEKKNEEEPEDWDEQEYISDPEDKKPDGYDDIPKEIPDT DSKKPEDWDDEEDGEWTAPTIPNPEYMGEWKPKQIKNPNYKGKWEAPLIDNPDFKDDPELYVFP KLKYVGLELWQVKSGSLFDNVLICDDPDYAKKLADETWGKLKDAEKAAFDEAEKKNEEEPEDWD EQEYISDPEDKKPDGYDDIPKEIPDTDSKKPEDWDDEEDGEWTAPTIPNPEYMGEWKPKQIKNP NYKGKWEAPLIDNPDFKDDPELYVFPKLKYVGLELWQVKSGSLFDNVLICDDPDYAKKLADETW GKLKDAEKAAFDEAEKKNEEEPEDWDEQEYISDPEDKKPDGYDDIPKEIPDTDSKKPEDWDDEE DGEWTAPTIPNPEYMGEWKPKQIKNPNYKGKWEAPLIDNPDFKDDPELYVFPKLKYVGLELWQV KSGSLFDNVLICDDPDYAKKLADETWGKLKDAEKAAFDEAEKKNEEE(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to heat stress |
Other Information | |
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References | Pan et al., 2017 |