Detail information of Os09g0248900_circ_g.6


General Information
CircRNA Name Os09g0248900_circ_g.6
ID in PlantcircBase osa_circ_038546
Alias NA
Organism Oryza sativa
Position chr9: 3727800-3728021  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os09g0248900
Parent gene annotation Myb/SANT-like domain domain containing protein. (Os09t0248900-01
)
Parent gene strand -
Alternative splicing Os09g0248900_circ_g.1 Os09g0248900_circ_g.2 Os09g0248900_circ_g.3 Os09g0248900_circ_g.4 Os09g0248900_circ_g.5
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CA-AT
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCTAAATAACAGTACCTCTTACCTCCATAAAGGGCTCCAAATAATATAGCGCCAAGGTATAAA
ATGAAAACAAACAAAGATGAAAGGTTGGAAACATACtttgtttcttctagtggatgtatggcaa
taataatttctatatattgtcattaatgttttcctctttactgtcattttattactaaagataa
gcaaatat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTTGTTTCTTCTAGTGGATGTATGGCAATAATAATTTCTATATATTGTCATTAATGTTTTCCTC
TTTACTGTCATTTTATTACTAAAGATAAGCAAATATATATTTTATAACACAAAACATAACCTAA
ATAACAGTACCTCTTACCTCCATAAAGGGCTCCAAATAATATAGCGCCAAGGTATAAAATGAAA
ACAAACAAAGATGAAAGGTTGGAAACATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.168968356
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017