Detail information of Os09g0248900_circ_g.4


General Information
CircRNA Name Os09g0248900_circ_g.4
ID in PlantcircBase osa_circ_038544
Alias Os_ciR1838
Organism Oryza sativa
Position chr9: 3726364-3728751  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method find_circ
Parent gene Os09g0248900
Parent gene annotation Myb/SANT-like domain domain containing protein. (Os09t0248900-01
)
Parent gene strand -
Alternative splicing Os09g0248900_circ_g.1 Os09g0248900_circ_g.2 Os09g0248900_circ_g.3 Os09g0248900_circ_g.5 Os09g0248900_circ_g.6
Support reads 7
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os09t0248900-01:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCTCCCTACATGCATCGTCCAACAATCGGACAACTTGCAGCAAATCCTTGTCATTGGCCATAT
TTGGATCATCGATCTTTTCAACAAGTGGGCTAATGTctcaagggcacatatgtcatcatcttgg
ttaaccaatgtcagaaggcctgtaatataatcaaatgacaaaaatgatcttcatgagtttgata
aacagaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCAAGGGCACATATGTCATCATCTTGGTTAACCAATGTCAGAAGGCCTGTAATATAATCAAAT
GACAAAAATGATCTTCATGAGTTTGATAAACAGAAATACAGAAAACACGTGAAACTTTTTACAA
TGCATCAAAGCACCTTATGTATGTGTTGTCCATATATAAAAGTCTATTTCGAAAGGAACTTCTG
AAAGATATGTACTAAGTACTAACCATAGTCTGTGTGAGCTCCACTGAATTGATCGCAGAACGGA
TGTGACATAAGAGAAAAACGGTGTCAGATGAATCTAGTAAGTACATTCTAGCACAATATACTAC
CAAATAAATACATAGATACATTTTGCTTACCAGCCAGTGTCAGTGCGATGCTCTTCTAGAATAT
CGGTTGATACAGGATAACCAATCAACCTGCAAACCCAAAAAGGATCTCCTGCGGTTCTACCTTC
AAAAGCATCAACTGGCCCACCCAATGCCAAGGCTATACCTTGCATGATCTTTCTGGAAAGATCT
ATAAGTAAAATTTCCATCAGAAAAAAAAAAGGATAAATAACATAGATGCATAGCTAAGATCTAA
ACTAAGTTCAAAAGTGAACCTCTTAGAAGGCTGATATAGTTTTTTAGTAGTGCATCAAAATTTG
ATGGATATTTTGGCCTGCATCAAAGTAAATGATATGGTTAATTGAATTTGAAATATTTCTAACC
AAAAGTACTCAAGGGAAGGGTACCAAATTAAGTTCAGAACAGCTCTTCAGTAATAGCAAAGTAA
TTCAACTAGTAGTATCAAAATATATAACATGGAATGCTATAATTCAACTATTCAAAATGCTTCT
AGTAACAACAATACATTATATTGAAGCAACATATGCAACAACAAATAATTCACAATTGTAGCCA
TATTGCATAACATGATACATATTGTTATTATTAATATATTGTAAATTAGAAATTCATTTCCTTC
ATTCTTCCAAATAGAGGTGTGCTATAAGCTAAATTAATTATATTATCATAATTATTATCAATGC
ATAGTAAGTGATCAATAAGTAGAATTGTGGTACCATTTTATATGAAAGTCAAGCAAGCAATATC
TCTCACATATGTTAAATAACATGAGCTTTTGTTATAGTACTCCCGGATTATTTTAGGCCATTCA
TTTCATATTGATATTTCTCTTTCCTCATTTAGAGGTAATAGATCTTGAAGTATGAAGAAAAAAG
TATTTTTCACTTGCTACTCCACCCGTTTTGATAATAATCGTCACTAGACACTATTCACTTTCAA
ACTTTCAATCATTTGTTATGTAATTTTAAGTAATTCTTTAAACATATGAACCACTTCAAATTTT
AAGATTTTCTTTTGAGTTTTGAAAACAATGGTGCTAGTATATTTCAAGTAAAATTTCTATTATA
GACACTTTTCATGGTTGCCTGAATTAATTTTGTTTCTTCTAGTGGATGTATGGCAATAATAATT
TCTATATATTGTCATTAATGTTTTCCTCTTTACTGTCATTTTATTACTAAAGATAAGCAAATAT
ATATTTTATAACACAAAACATAACCTAAATAACAGTACCTCTTACCTCCATAAAGGGCTCCAAA
TAATATAGCGCCAAGGTATAAAATGAAAACAAACAAAGATGAAAGGTTGGAAACATACCACAAA
TTAGTTCCTTCCATTGGTTTGGCAAGATCTCCATATTTACCAGGTTCAATAGGCGCATAATACT
GTGACGTTTTTTCTTCTCAGCGATTAACTAGTAACAAGTTAATGGGTCACTAAAAATAAAGAAA
GAAAAATAAACTTACATCAATTGCTTCCTGCATGTCAGGTTTACCGTTGGTAATATTTTCGCCC
AGTCTTTGGTATCCTCTGATGATCAAGAGAACAAAGTTACTCATAGAGAAAGGACGCTTTGAAC
GACCCAAAACGGAGCACGGAAAAATCAATGTTGGAACTTAAAATGGTACTATAAGAAATCACAC
CTATATCCATTCTGAGGTGTCATTTTAATCTTTAGTTTTTCTTCATAAGGAAGTTGGAAGAACT
TGTGTGTGACGTCCCTAACTTCCTTCATTAGCGACTCAGCAATCCCATGGCCTTTCTGTTAATA
ATAATAACATACAGATGAACATTTGCATTACTTAGCTTCGGTAGTAATATAAAAATCATAGCTT
GCAACGCAAGGACACAGCTACATCAAAATATTCTTGTTGATCTGTACCCATTGTACTATAAAGT
GATGCTAAAAAGGTAAGTAAACGTGTAATTACCACATAAAAGAATCCAGCCTCCCTACATGCAT
CGTCCAACAATCGGACAACTTGCAGCAAATCCTTGTCATTGGCCATATTTGGATCATCGATCTT
TTCAACAAGTGGGCTAATGT
Conservation Information
Conserved circRNAs NA
PMCS 0.10816607
Functional Information
Coding potential Y
Potential coding position 3728459-3726580(+)
3728715-3728637(-)
Potential amino acid sequence MAFHIKESSLPTCIVQQSDNLQQILVIGHIWIIDLFNKWANVSRAHMSSSWLTNVRRP*(+)
MANDKDLLQVVRLLDDACREAGFFYVKGHGIAESLMKEVRDVTHKFFQLPYEEKLKIKMTPQNG
YRGYQRLGENITNGKPDMQEAIDYYAPIEPGKYGDLAKPMEGTNLWPKYPSNFDALLKNYISLL
RDLSRKIMQGIALALGGPVDAFEGRTAGDPFWVCRLIGYPVSTDILEEHRTDTGCGAHTDYGLL
TLVNQDDDICALETLAHLLKRSMIQIWPMTRICCKLSDCWTMHVGRLDSFM*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015