Detail information of Os04g0503550_circ_g.9


General Information
CircRNA Name Os04g0503550_circ_g.9
ID in PlantcircBase osa_circ_024489
Alias NA
Organism Oryza sativa
Position chr4: 25131580-25131818  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0503500
Parent gene annotation Leucine-rich repeat, cysteine-containing subtype containing prot
ein. (Os04t0503500-01);Leucine-rich repeat, cysteine-containing
subtype containing protein. (Os04t0503500-02)
Parent gene strand -
Alternative splicing Os04g0503550_circ_g.4 Os04g0503550_circ_g.5 Os04g0503550_circ_g.6 Os04g0503550_circ_g.7 Os04g0503550_circ_g.8 Os04g0503550_circ_g.10 Os04g0503550_circ_g.11
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0503550-00:2
Os04t0503500-01:2
Os04t0503550-00:2
Os04t0503500-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGATGGTCAACATAAAGGTGTTACCTGATAAATGTTTCATATCAGAATCTGTGATGCCATTAC
AATACCTCAAATTTAGCTTTTCCAGTTTTCTCAAGCctcttagataagaaacaccaagatcact
tattttgcagcaagaaagttgaagctctctcaaatttgtaagatctacaaggaaaagggtattt
attagacg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTTAGATAAGAAACACCAAGATCACTTATTTTGCAGCAAGAAAGTTGAAGCTCTCTCAAATT
TGTAAGATCTACAAGGAAAAGGGTATTTATTAGACGTGCAGATCAGTATGTGTGATAACATACA
CTGCTTGACACTAGATGGTCAACATAAAGGTGTTACCTGATAAATGTTTCATATCAGAATCTGT
GATGCCATTACAATACCTCAAATTTAGCTTTTCCAGTTTTCTCAAGC
Conservation Information
Conserved circRNAs NA
PMCS 0.307774791
Functional Information
Coding potential Y
Potential coding position 25131761-25131582(-)
Potential amino acid sequence MKHLSDLTNLRELQLSCCKISDLGVSYLRGLRKLEKLNLRYCNGITDSDMKHLSDLTNLRELQL
SCCKISDLGVSYLRGLRKLEKLNLRYCNGITDSDMKHLSDLTNLRELQLSCCKISDLGVSYLRG
LRKLEKLNLRYCNGITDSDMKHLSDLTNLRELQLSCCKISDLGVSYLR(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017