CircRNA Name |
AT5G01670_circ_g.5 |
ID in PlantcircBase |
ath_circ_035917 |
Alias |
Ath_circ_FC0066, Ath_circ_FC3096 |
Organism |
Arabidpsis thaliana |
Position |
chr5: 252603-253114 JBrowse» |
Reference genome |
TAIR10.38 |
Type |
e-circRNA
|
Identification method |
CIRCexplorer, KNIFE, PcircRNA_finder |
Parent gene |
AT5G01670 |
Parent gene annotation |
NAD(P)-linked oxidoreductase superfamily protein |
Parent gene strand |
+ |
Alternative splicing |
AT5G01670_circ_g.1 AT5G01670_circ_g.2 AT5G01670_circ_g.3 AT5G01670_circ_g.4 AT5G01670_circ_g.6 AT5G01670_circ_g.7 AT5G01670_circ_g.8 AT5G01670_circ_g.9 AT5G01670_circ_g.10 AT5G01670_circ_g.11 |
Support reads |
3 |
Tissues |
inflorescences |
Exon boundary |
Yes-Yes
"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
|
Splicing signals |
GT-AG
The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
|
Number of exons covered |
AT5G01670.2:3 AT5G01670.1:3
|