Detail information of Os02g0608400_circ_g.1


General Information
CircRNA Name Os02g0608400_circ_g.1
ID in PlantcircBase osa_circ_015420
Alias NA
Organism Oryza sativa
Position chr2: 23868289-23872474  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method PcircRNA_finder
Parent gene Os02g0608400
Parent gene annotation EF-Hand type domain containing protein. (Os02t0608400-01);Simila
r to Ca2+ binding protein cbp1. (Os02t0608400-02)
Parent gene strand -
Alternative splicing Os02g0608400_circ_g.2 Os02g0608400_circ_g.3 Os02g0608400_circ_g.4 Os02g0608400_circ_g.5 Os02g0608400_circ_g.6 Os02g0608400_circ_g.7 Os02g0608400_circ_g.8 Os02g0608400_circ_g.9 Os02g0608400_circ_g.10
Support reads 3
Tissues shoot
Exon boundary   No-No
Splicing signals   CC-TA
Number of exons covered Os02t0608400-01:9
Os02t0608400-02:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCACTACGTGATGTTTGAACTTCCTTTGCCATTTCTTTTGCAGTATCTTGCAAAAACTTGGCAT
ACTCCATTCTTGCTTTCAGTTTCCTTTTCAACGCTTccttctcaatcagcgccgatgagacctt
ttcttcttcatcaacctcagcagccttgtccgactcttctctagcagccatgtaagctttctta
gcttcctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTCTCAATCAGCGCCGATGAGACCTTTTCTTCTTCATCAACCTCAGCAGCCTTGTCCGACTC
TTCTCTAGCAGCCATGTAAGCTTTCTTAGCTTCCTCTTCACCTTCTGTACCCTCCTTTTCAAGC
ATAGAGTTATACAGTTCAATCTGCATTCAACAAAGACCAAGAGTTATTGAACCCTCCCAAGTAT
TTGCAACAAAAATGGAAGATAACTGCATGAACAATTGTCACTCTAATATCACTTTACAAGTTCA
TATGATACCTCTTTGTTGACAAGGCTGAGGAACTCTTGACGCTCCTTGCTAACAGACTGCAATA
TAAGGAAGTCAGAAAAATGGCCTGTTGAATGCTCATAATTACAGTAAAAGAAATGCATAATTAT
TTTCTATCATATAAAAACAGTAGTGGTTCAATAGAATTATAAGGATACTAAAGTCAGTGTATAG
TTACCAAAAGAAAGTATGGACTAACTAGGATCATACCGATGCGGATGCCAGTACAGCCAGTGCT
CGACTAAAATTACAGAGCTTTTCCTTATCGTGCTGTTTTGCTTCTCTCAGTTCTTCTTCTTCCC
TAGCAGTAGGACCAGTCATTTCCTTCAAAGCCAAATCTTCTTCAGCAGCCTTTGGTTCTTTGAG
TTTGGCCTTTTCTTCTTTCTCTTGTTTCGCTTTTTCTTCTTTCTCTTTCTTCTTCTCTTCCTCC
TGAATATTTTCATATCAAAAGCATTAACAATTCAATGTTAGCAATATTATCCTGAAGATAGAAC
AATTGGGCTACAGTTCAACCTAGGGATTTTAGAAGTATCACGCAGAACATAAAATAATTGGGAT
ACTGTTTAGTCCTACTTCTAGCAGTATTTTGCTGAAATGAAAGTAATTTGTTTCAGAAAAAGGA
AAAAGCATGTTCCTTCCACAATATTAAACTAAAGTTGACACATCAGATTTCATCAACAGACTTA
TGTTCTTCTCAAGCTAAGTGTAAATACAGCATATTATAGTTCTTACATCCAATGGATTAGCTGA
TAAACAGAAACTTAACAGTCTAAATTTGAGTAAAATTTGTAATGACTCCTCCAAACTTCTTAAT
ATGGGCACATAAACAGAAACTTAACAGTCTAACTTTGGCACGTGTGAAAACACACGTCACACAA
GAATCAGTTAATGCATCACAATTTAGATGCACTATCGTATATGTGTTGTTTTCTCCAATTACTC
TTTTTTCAGTCATTCTTTTTTTTGTTCTTCACAAGGAAAAGTTTGAATAGTATAAACCATGTAC
TGTTTCTGATATATGCATTACCAAGAGGATATGGAAGATCCTATGAGGTTCAAGCATGAAACCT
AGCAAGGGCACAACAGAACATGCAATACTAAATACTAATACGCCTAACATTCACACAAATCAGA
ATCTGAGAATGCAGAGTGCAGATGATCCATCAGTTGTCCTATAAATGGATGTGTTTCTGAACTA
GGTCAAATACAATTTAATATAAATTAAGATATGGTACATAAAGATTAAACACAGGAAGCATTTT
TAACAGAGGGCAGTTCTGCATCGGCTGATATTTGTACAATCAAAGTGATTTACTGATTTCATAA
ATGCCCCAAGAATAACTGTTTAATTTGCACAAGCAGAAGTGAAATATCTTATGTACATAAAGAA
AGGACCATATTATGTATACATCACCTTGATAAGTTCTTCCTGCATCTCAAGGAATTCCAGTTTT
CTCCTCCTCTCAGAAACCGAATCTTCAGATGGCAATACGGTCCCAACTGTATCCACAACTTCAT
CTGGTAGAGAAGATAAGGTTGCTACAACAGCCTCCTCAGGCTTCATTTTCCCAGATACGGTAAA
AGCTCTAACATCACCAGATATGAGTTAGAATCAAGCACGAACAAATCAAACAGCAGTATCATAG
CAAACGAGAAATATGTGATATCAATCAATGTTACCTTGAAAGTATGAGAAGAGAGGATGGCACA
GCATGATTAAGTGAGAGATCCAACCAATCTCGGAGCTGGACAGGAAGCAAAATTACTAGCTTAG
AAAAATATTCAGTTACAAGATAGCAGTTAGTTTTTTGTAACACACAACAGTATGGTTAAAAGCT
ATGTGATCAAGTTTTTTATGTGCTCAATTCAAGGTGGAAATGCAGAAGCTAAGTGCTAGTTACA
ACTTTCCTTCATCTGCCTATCAGACCTAACAGAACATTACCCAAGAAGAAATAATCTAATGAGA
TCATATGTCTCAAACTAATAAGTAATAAACTAAAGAATGAGAAAGTAACAACTAGGACAAATAA
TTTTGCACAGAACAAACATATATTCTTTTGTAGAACAAAACTATAAGCCCGGCATGGAAATTGA
TGGATGGCTCTAATCTATGGAAACACAAAAATGAGTATGCCGCATCACTAGTCATTCTTGACAC
AAGAATCAAAGGTGTGTTAAAATGACCGAAGTTAAGCCTAGACATGTGCATGAGATATCATTAT
CACGGATATGTTGTTTGGACTAAATGGACAGTGGATGGAAAAAGGTGTGAACTAATTCGTCCCA
AAAAGGAAGAATGGCATATAATGTGAGAAAGGAATGAATGCCAAGAGTGACGTATAGGCAGCGA
GAGTAACAAATAATTCCAGCAAGTAAAAGAGTGAATAAATTGTGTGGATATGCATATAGCGGAA
ACAATGCAAAACCAACCTGTTGGCGCATTTCTTCTGTTGACAGCAAACCTAGGTGACCACGTTC
ACGACAGGCTTGCCGAAGTTCCTCTTCAGAGAGAGACTCAACACCCTCAGCTTGAATCATCTTA
TCGTCATTCTTAATGCTACATATAGAAGAATATAATTACAAACCAAAAATAAATAAACTCGGTC
CCAAGGGGAAAGACCTCCCCCAGGGCATTTCAATACACCTGAAACCGGGGGCTGGGGAAGGCCA
CGAAAGCCAGTCCCCCCCCCCAACCCCCAACCAAAAAAAAAAAAAACTCGGGGAGACGCCCCCT
ATGGATCAGGAAGGTGGGCCCTCACTACAAACAATAACCAGATATTTCGCCCTACTATTATGGA
AAATGCAAACGGCAGCAAAGTAAATAGCAAAACAACTAGTGCATTGAATAATAAGATACTGTTA
AAATATCTTATCTGTACAGCAAATAATCATAGTTGTTAAACCTGAGAAACTGTTCGAGTCAAAT
GTATGCCACAGCCACTTAGGGTACATAGATCTTGAAAAATACAAACAAATACAAATTCTGGTGT
TTACTAAGTTTCAGTTGCATATCCAGCAAAAAAATTACTGTTTATTTTCTTTGCATATGAATTA
GGTGCCGTAGACTTTTGCTTGAAATCACTCCTTTGTTTTACAATTTGCAGGCCACCCACCTCTG
TTCTTATATTATGCAATTATGATAAGAGACTACAAGATTGCAAAAATCACTCAGTATGCCATTT
GATGGTTGTCTTCTAAGCTTTATGAGAGAAAGTACTAAGCAATAAGCTATCCCCAGGTATCCAT
CACTCGCTGTATTTCAAAATTGACCATTCCAAACTTCCAGTCATATTTATGTCAAACAGATTTA
AGACACCAAATATGCAAATCTAATTGGCACTCCAGTTGTTAAGTTAAATATTTTCATACATGTC
ATATAATCTTCTCGACGCAAGTACTTACTCTTGCAGTTTTTTGCGAAGCATGAACCTCAAGTAG
TGGTCAGTACCGAAAGGTCGAATACCCATATATTTGCACATGTTTACCAAGCGTGGTCTGCAGA
AAAATTGAAAAAAGAAATATCAATCAGCAATCAGCTCTAGTGTAATGTGATGATGAACTTACAA
GTATATTAAGAATGGTAACCTGCTCATGTTATCCAAAGTCAGCTCATCATTAAACAGCTTCGCG
AAGTTCAAGATTTCATCATTTGAGACATGTTCACCTCTCCTAACCTAATTACCATTTAAAGTGA
GTTATTCGACAAACAAATTCAGAAAATCGTCTAACCTTCTAGTGACAAACAACGCATGTATAGA
ACTTATACCTTGTTCAAAAATTCATCAAGATCTTCGGCTGTTTGTTTTATTTCTCCACTACGTG
ATGTTTGAACTTCCTTTGCCATTTCTTTTGCAGTATCTTGCAAAAACTTGGCATACTCCATTCT
TGCTTTCAGTTTCCTTTTCAACGCTT
Conservation Information
Conserved circRNAs NA
PMCS 0.121235033
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017