Plant Circular RNA Database

Detail information of Os02g0608400_circ_g.6

			
						 General Information
					
						CircRNA Name
						Os02g0608400_circ_g.6
					
						ID in PlantcircBase
						osa_circ_015425
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 23868773-23873848  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0608400						
					
						Parent gene annotation
						
							EF-Hand type domain containing protein. (Os02t0608400-01);Simila
r to Ca2+ binding protein cbp1. (Os02t0608400-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os02g0608400_circ_g.1 Os02g0608400_circ_g.2 Os02g0608400_circ_g.3 Os02g0608400_circ_g.4 Os02g0608400_circ_g.5 Os02g0608400_circ_g.7 Os02g0608400_circ_g.8 Os02g0608400_circ_g.9 Os02g0608400_circ_g.10 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0608400-02:9
Os02t0608400-01:9

General Information
CircRNA Name	Os02g0608400_circ_g.6
ID in PlantcircBase	osa_circ_015425
Alias	NA
Organism	Oryza sativa
Position	chr2: 23868773-23873848 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0608400
Parent gene annotation	EF-Hand type domain containing protein. (Os02t0608400-01);Simila r to Ca2+ binding protein cbp1. (Os02t0608400-02)
Parent gene strand	-
Alternative splicing	Os02g0608400_circ_g.1 Os02g0608400_circ_g.2 Os02g0608400_circ_g.3 Os02g0608400_circ_g.4 Os02g0608400_circ_g.5 Os02g0608400_circ_g.7 Os02g0608400_circ_g.8 Os02g0608400_circ_g.9 Os02g0608400_circ_g.10
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0608400-02:9 Os02t0608400-01:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GATACTTCCTTCTTCTGATGACCGCCCTTGAAGCCATACTTAATTGCTTCACACCTTTCCAATT
AGAAGGCCAAGGTCATGCCTTTTTCGGACAAAGACCcgatgcggatgccagtacagccagtgct
cgactaaaattacagagcttttccttatcgtgctgttttgcttctctcagttcttcttcttccc
tagcagta

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1887
Transcript exons: 23868773-23868991,23869977-23870148,23870243-23870307,23
870993-23871119,23871965-23872057,23872148-23872236,2387
2329-23872475,23872768-23873080,23873187-23873848
CGATGCGGATGCCAGTACAGCCAGTGCTCGACTAAAATTACAGAGCTTTTCCTTATCGTGCTGT
TTTGCTTCTCTCAGTTCTTCTTCTTCCCTAGCAGTAGGACCAGTCATTTCCTTCAAAGCCAAAT
CTTCTTCAGCAGCCTTTGGTTCTTTGAGTTTGGCCTTTTCTTCTTTCTCTTGTTTCGCTTTTTC
TTCTTTCTCTTTCTTCTTCTCTTCCTCCTTGATAAGTTCTTCCTGCATCTCAAGGAATTCCAGT
TTTCTCCTCCTCTCAGAAACCGAATCTTCAGATGGCAATACGGTCCCAACTGTATCCACAACTT
CATCTGGTAGAGAAGATAAGGTTGCTACAACAGCCTCCTCAGGCTTCATTTTCCCAGATACGGT
AAAAGCTCTTGAAAGTATGAGAAGAGAGGATGGCACAGCATGATTAAGTGAGAGATCCAACCAA
TCTCGGAGCTGTTGGCGCATTTCTTCTGTTGACAGCAAACCTAGGTGACCACGTTCACGACAGG
CTTGCCGAAGTTCCTCTTCAGAGAGAGACTCAACACCCTCAGCTTGAATCATCTTATCGTCATT
CTTAATGTCTTGCAGTTTTTTGCGAAGCATGAACCTCAAGTAGTGGTCAGTACCGAAAGGTCGA
ATACCCATATATTTGCACATGTTTACCAAGCGTGGTCTGCTCATGTTATCCAAAGTCAGCTCAT
CATTAAACAGCTTCGCGAAGTTCAAGATTTCATCATTTGAGACATGTTCACCTCTCCTAACCTT
GTTCAAAAATTCATCAAGATCTTCGGCTGTTTGTTTTATTTCTCCACTACGTGATGTTTGAACT
TCCTTTGCCATTTCTTTTGCAGTATCTTGCAAAAACTTGGCATACTCCATTCTTGCTTTCAGTT
TCCTTTTCAACGCTTCCTCTTCTTTCATCTTGTCTTGGAAAGTTGAGGGAAGCATATTTGGAAA
TAACTTGAGGAACACTGGAAGTAAGAACTCCATGAATGGAACAATGATGAACACAGCAAAAGGT
ACCAGCCTGAAGATATCTGCTGTTGTACGGGTCAGTTGTTGTCTCTCTCTTCTTGAAAGGTTCT
TTCCACCAGCAAGTTTCACCAGTAATCTTGACGAAATCCTCACATCTGCCCAGAGTAGCTTTGT
CCCTAACCAGTAATGCTGCAGCGTTGACACAAATTCATCCTTCCAGTGCTTCAGCTTTGCAGCC
CAATCAGCTCTGCTCATCGAAGCAACAGCTCGGAGAGCAGGACCAATACCCAGAAGCCTCGCCC
AGAATTTTCGTACAATTGATTGGCCAGCCTTTACAGATTCTTGTACCTGCTTAGCTTTGGCTTT
AGCTTTTGCACTGCTTAGGCCTTCCACAGCCTGATCACATTCTTCTGGGGATGCCTCCTTTTTC
CTTTTGTTCTGTTTCTGATCCTCACTCTGTTCATCTTCAATATCCAACTTAGGTTGCCCAGCTG
TTGCAGTTGAGGCTGTGCGGACTGACTGCAGCAAATGTCTAGCACCCATAGGCAACCCAAATTC
CTTCCTTCCAATTCCATAAGCAGGTAGAGAAATCCCATGGGCTGGGCGCCGCAGAAGCCCATTA
CCAAGGGCTAGTAGATCTCCCTTTATCAATTTCACACCATACTGCCCTTGCTCCCATTTGGAAT
CCCCAGAGCTTTGCTCAAGAAATCGCTGTCCGATTCTTGATTCATCCTCAGAACCAGATCTTCC
ATGTTGGAAGGTAGAGAAGGGGGACAATGAGAGGGTAGGTGCGTTAACATGATCCAAAAGATAC
TTCCTTCTTCTGATGACCGCCCTTGAAGCCATACTTAATTGCTTCACACCTTTCCAATTAGAAG
GCCAAGGTCATGCCTTTTTCGGACAAAGACC
						
					

						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.						
					

			
		

Sequences
Splice junction sequence	GATACTTCCTTCTTCTGATGACCGCCCTTGAAGCCATACTTAATTGCTTCACACCTTTCCAATT AGAAGGCCAAGGTCATGCCTTTTTCGGACAAAGACCcgatgcggatgccagtacagccagtgct cgactaaaattacagagcttttccttatcgtgctgttttgcttctctcagttcttcttcttccc tagcagta
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1887 Transcript exons: 23868773-23868991,23869977-23870148,23870243-23870307,23 870993-23871119,23871965-23872057,23872148-23872236,2387 2329-23872475,23872768-23873080,23873187-23873848 CGATGCGGATGCCAGTACAGCCAGTGCTCGACTAAAATTACAGAGCTTTTCCTTATCGTGCTGT TTTGCTTCTCTCAGTTCTTCTTCTTCCCTAGCAGTAGGACCAGTCATTTCCTTCAAAGCCAAAT CTTCTTCAGCAGCCTTTGGTTCTTTGAGTTTGGCCTTTTCTTCTTTCTCTTGTTTCGCTTTTTC TTCTTTCTCTTTCTTCTTCTCTTCCTCCTTGATAAGTTCTTCCTGCATCTCAAGGAATTCCAGT TTTCTCCTCCTCTCAGAAACCGAATCTTCAGATGGCAATACGGTCCCAACTGTATCCACAACTT CATCTGGTAGAGAAGATAAGGTTGCTACAACAGCCTCCTCAGGCTTCATTTTCCCAGATACGGT AAAAGCTCTTGAAAGTATGAGAAGAGAGGATGGCACAGCATGATTAAGTGAGAGATCCAACCAA TCTCGGAGCTGTTGGCGCATTTCTTCTGTTGACAGCAAACCTAGGTGACCACGTTCACGACAGG CTTGCCGAAGTTCCTCTTCAGAGAGAGACTCAACACCCTCAGCTTGAATCATCTTATCGTCATT CTTAATGTCTTGCAGTTTTTTGCGAAGCATGAACCTCAAGTAGTGGTCAGTACCGAAAGGTCGA ATACCCATATATTTGCACATGTTTACCAAGCGTGGTCTGCTCATGTTATCCAAAGTCAGCTCAT CATTAAACAGCTTCGCGAAGTTCAAGATTTCATCATTTGAGACATGTTCACCTCTCCTAACCTT GTTCAAAAATTCATCAAGATCTTCGGCTGTTTGTTTTATTTCTCCACTACGTGATGTTTGAACT TCCTTTGCCATTTCTTTTGCAGTATCTTGCAAAAACTTGGCATACTCCATTCTTGCTTTCAGTT TCCTTTTCAACGCTTCCTCTTCTTTCATCTTGTCTTGGAAAGTTGAGGGAAGCATATTTGGAAA TAACTTGAGGAACACTGGAAGTAAGAACTCCATGAATGGAACAATGATGAACACAGCAAAAGGT ACCAGCCTGAAGATATCTGCTGTTGTACGGGTCAGTTGTTGTCTCTCTCTTCTTGAAAGGTTCT TTCCACCAGCAAGTTTCACCAGTAATCTTGACGAAATCCTCACATCTGCCCAGAGTAGCTTTGT CCCTAACCAGTAATGCTGCAGCGTTGACACAAATTCATCCTTCCAGTGCTTCAGCTTTGCAGCC CAATCAGCTCTGCTCATCGAAGCAACAGCTCGGAGAGCAGGACCAATACCCAGAAGCCTCGCCC AGAATTTTCGTACAATTGATTGGCCAGCCTTTACAGATTCTTGTACCTGCTTAGCTTTGGCTTT AGCTTTTGCACTGCTTAGGCCTTCCACAGCCTGATCACATTCTTCTGGGGATGCCTCCTTTTTC CTTTTGTTCTGTTTCTGATCCTCACTCTGTTCATCTTCAATATCCAACTTAGGTTGCCCAGCTG TTGCAGTTGAGGCTGTGCGGACTGACTGCAGCAAATGTCTAGCACCCATAGGCAACCCAAATTC CTTCCTTCCAATTCCATAAGCAGGTAGAGAAATCCCATGGGCTGGGCGCCGCAGAAGCCCATTA CCAAGGGCTAGTAGATCTCCCTTTATCAATTTCACACCATACTGCCCTTGCTCCCATTTGGAAT CCCCAGAGCTTTGCTCAAGAAATCGCTGTCCGATTCTTGATTCATCCTCAGAACCAGATCTTCC ATGTTGGAAGGTAGAGAAGGGGGACAATGAGAGGGTAGGTGCGTTAACATGATCCAAAAGATAC TTCCTTCTTCTGATGACCGCCCTTGAAGCCATACTTAATTGCTTCACACCTTTCCAATTAGAAG GCCAAGGTCATGCCTTTTTCGGACAAAGACC
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.46777471

Conservation Information
Conserved circRNAs	NA
PMCS	0.46777471

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							23873767-23870275(+)
23873787-23873827(-)
						
						Potential amino acid sequence
						
							MTALEAILNCFTPFQLEGQGHAFFGQRPDADASTASARLKLQSFSLSCCFASLSSSSSLAVGPV
ISFKAKSSSAAFGSLSLAFSSFSCFAFSSFSFFFSSSLISSSCISRNSSFLLLSETESSDGNTV
PTVSTTSSGREDKVATTASSGFIFPDTVKALESMRREDGTA*(+)
MASRAVIRRRKYLLDHVNAPTLSLSPFSTFQHGRSGSEDESRIGQRFLEQSSGDSKWEQGQYGV
KLIKGDLLALGNGLLRRPAHGISLPAYGIGRKEFGLPMGARHLLQSVRTASTATAGQPKLDIED
EQSEDQKQNKRKKEASPEECDQAVEGLSSAKAKAKAKQVQESVKAGQSIVRKFWARLLGIGPAL
RAVASMSRADWAAKLKHWKDEFVSTLQHYWLGTKLLWADVRISSRLLVKLAGGKNLSRRERQQL
TRTTADIFRLVPFAVFIIVPFMEFLLPVFLKLFPNMLPSTFQDKMKEEEALKRKLKARMEYAKF
LQDTAKEMAKEVQTSRSGEIKQTAEDLDEFLNKVRRGEHVSNDEILNFAKLFNDELTLDNMSRP
RLVNMCKYMGIRPFGTDHYLRFMLRKKLQDIKNDDKMIQAEGVESLSEEELRQACRERGHLGLL
STEEMRQQLRDWLDLSLNHAVPSSLLILSRAFTVSGKMKPEEAVVATLSSLPDEVVDTVGTVLP
SEDSVSERRRKLEFLEMQEELIKEEEKKKEKEEKAKQEKEEKAKLKEPKAAEEDLALKEMTGPT
AREEEELREAKQHDKEKLCNFSRALAVLASASGLCPKKA*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	23873767-23870275(+) 23873787-23873827(-)
Potential amino acid sequence	MTALEAILNCFTPFQLEGQGHAFFGQRPDADASTASARLKLQSFSLSCCFASLSSSSSLAVGPV ISFKAKSSSAAFGSLSLAFSSFSCFAFSSFSFFFSSSLISSSCISRNSSFLLLSETESSDGNTV PTVSTTSSGREDKVATTASSGFIFPDTVKALESMRREDGTA(+) MASRAVIRRRKYLLDHVNAPTLSLSPFSTFQHGRSGSEDESRIGQRFLEQSSGDSKWEQGQYGV KLIKGDLLALGNGLLRRPAHGISLPAYGIGRKEFGLPMGARHLLQSVRTASTATAGQPKLDIED EQSEDQKQNKRKKEASPEECDQAVEGLSSAKAKAKAKQVQESVKAGQSIVRKFWARLLGIGPAL RAVASMSRADWAAKLKHWKDEFVSTLQHYWLGTKLLWADVRISSRLLVKLAGGKNLSRRERQQL TRTTADIFRLVPFAVFIIVPFMEFLLPVFLKLFPNMLPSTFQDKMKEEEALKRKLKARMEYAKF LQDTAKEMAKEVQTSRSGEIKQTAEDLDEFLNKVRRGEHVSNDEILNFAKLFNDELTLDNMSRP RLVNMCKYMGIRPFGTDHYLRFMLRKKLQDIKNDDKMIQAEGVESLSEEELRQACRERGHLGLL STEEMRQQLRDWLDLSLNHAVPSSLLILSRAFTVSGKMKPEEAVVATLSSLPDEVVDTVGTVLP SEDSVSERRRKLEFLEMQEELIKEEEKKKEKEEKAKQEKEEKAKLKEPKAAEEDLALKEMTGPT AREEEELREAKQHDKEKLCNFSRALAVLASASGLCPKKA(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0608400_circ_g.6

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